RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GRAPLQ8TC17 118 aaPredicted RBP15.74■□□□□ 0.11
LDLR-201ENST00000252444 ZBTB1Q9Y2K1 713 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 PATL2C9JE40 543 aaKnown RBP15.73■□□□□ 0.11
LDLR-201ENST00000252444 SERPINB2P05120 415 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 SYCP1Q15431 976 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 TTLL7Q6ZT98 887 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 DBNDD2Q9BQY9 259 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 MMP14P50281 582 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 NOC3LQ8WTT2 800 aaKnown RBP15.73■□□□□ 0.11
LDLR-201ENST00000252444 MYO6Q9UM54 1294 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 BSDC1Q9NW68 430 aaPredicted RBP15.73■□□□□ 0.11
LDLR-201ENST00000252444 KCNQ3O43525 872 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 OFD1O75665 1012 aa15.73■□□□□ 0.11
LDLR-201ENST00000252444 ZSCAN22P10073 491 aaPredicted RBP15.73■□□□□ 0.11
LDLR-201ENST00000252444 FOXD4L6Q3SYB3 417 aaPredicted RBP15.73■□□□□ 0.11
LDLR-201ENST00000252444 FOXD4L3Q6VB84 417 aaPredicted RBP15.73■□□□□ 0.11
LDLR-201ENST00000252444 UPF3BQ9BZI7 483 aaKnown RBP15.73■□□□□ 0.11
LDLR-201ENST00000252444 RPS6KB1P23443 525 aa15.72■□□□□ 0.11
LDLR-201ENST00000252444 CCDC93Q567U6 631 aa15.72■□□□□ 0.11
LDLR-201ENST00000252444 TBC1D2Q9BYX2 928 aa15.72■□□□□ 0.11
LDLR-201ENST00000252444 DKC1O60832 514 aaKnown RBP eCLIP15.72■□□□□ 0.111e-5■□□□□ 10.7
LDLR-201ENST00000252444 CAVIN1Q6NZI2 390 aaKnown RBP15.72■□□□□ 0.11
LDLR-201ENST00000252444 JARID2Q92833 1246 aaPredicted RBP15.72■□□□□ 0.11
LDLR-201ENST00000252444 MASTLQ96GX5 879 aa15.72■□□□□ 0.11
LDLR-201ENST00000252444 ZNF804BA4D1E1 1349 aa15.72■□□□□ 0.11
LDLR-201ENST00000252444 PARP1P09874 1014 aaKnown RBP15.72■□□□□ 0.11
LDLR-201ENST00000252444 UBE2HP62256 183 aa15.72■□□□□ 0.11
LDLR-201ENST00000252444 TMX3Q96JJ7 454 aa15.72■□□□□ 0.11
LDLR-201ENST00000252444 C8orf34Q49A92 452 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 Q6ZUG5 572 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 ATP2B1P20020 1258 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 BRF1Q92994 677 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 GOPCQ9HD26 462 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 ATP8A2Q9NTI2 1148 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 H7C1D1 291 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 CYP19A1P11511 503 aaPredicted RBP15.71■□□□□ 0.11
LDLR-201ENST00000252444 PICK1Q9NRD5 415 aa15.71■□□□□ 0.11
LDLR-201ENST00000252444 GPS2Q13227 327 aa15.71■□□□□ 0.1
LDLR-201ENST00000252444 SLC26A6Q9BXS9 759 aa15.71■□□□□ 0.1
LDLR-201ENST00000252444 ZNF219Q9P2Y4 722 aaPredicted RBP15.71■□□□□ 0.1
LDLR-201ENST00000252444 GALNT17Q6IS24 598 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 USP37Q86T82 979 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 PPFIBP1Q86W92 1011 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 TMOD4Q9NZQ9 345 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 PNMA6EA0A0J9YXQ4 647 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 DEXIO95424 95 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 KRT2P35908 639 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 RBM26Q5T8P6 1007 aaKnown RBP15.7■□□□□ 0.1
LDLR-201ENST00000252444 ALG1Q9BT22 464 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 COL3A1P02461 1466 aaPredicted RBP15.7■□□□□ 0.1
LDLR-201ENST00000252444 GPAA1O43292 621 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 UVSSAQ2YD98 709 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 AXIN2Q9Y2T1 843 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 SUGT1Q9Y2Z0 365 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 TNS2Q63HR2 1409 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 hCG_1984214I3L0E3 225 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 ZNF713Q8N859 430 aaPredicted RBP15.7■□□□□ 0.1
LDLR-201ENST00000252444 TNPO1Q92973 898 aaKnown RBP15.7■□□□□ 0.1
LDLR-201ENST00000252444 CCDC17Q96LX7 622 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 ISCA1Q9BUE6 129 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 CHRNDQ07001 517 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 PABPC4Q13310 644 aaKnown RBP eCLIP15.7■□□□□ 0.11e-8■□□□□ 9.7
LDLR-201ENST00000252444 SLC16A10Q8TF71 515 aa15.7■□□□□ 0.1
LDLR-201ENST00000252444 KDM4FA0A1W2PPD8 638 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 POTEJP0CG39 1038 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 DDX11Q96FC9 970 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 COA1Q9GZY4 146 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.69■□□□□ 0.1
LDLR-201ENST00000252444 PPIP5K2O43314 1243 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 HOXA7P31268 230 aaPredicted RBP15.69■□□□□ 0.1
LDLR-201ENST00000252444 DLGAP5Q15398 846 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.69■□□□□ 0.1
LDLR-201ENST00000252444 MICU3Q86XE3 530 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 MTA3Q9BTC8 594 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 USP25Q9UHP3 1055 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 KCNG1Q9UIX4 513 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 ANGEL1Q9UNK9 670 aaKnown RBP15.69■□□□□ 0.1
LDLR-201ENST00000252444 TRIM37O94972 964 aa15.69■□□□□ 0.1
LDLR-201ENST00000252444 MON2Q7Z3U7 1717 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 DPY19L2Q6NUT2 758 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 USP48Q86UV5 1035 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 TRIM5Q9C035 493 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 STX8Q9UNK0 236 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 NEMFO60524 1076 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 APBB1IPQ7Z5R6 666 aaPredicted RBP15.68■□□□□ 0.1
LDLR-201ENST00000252444 FMNL3Q8IVF7 1028 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 ZNF397Q8NF99 534 aaPredicted RBP15.68■□□□□ 0.1
LDLR-201ENST00000252444 MYO5BQ9ULV0 1848 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 SLC27A2O14975 620 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 XRN1Q8IZH2 1706 aaKnown RBP15.68■□□□□ 0.1
LDLR-201ENST00000252444 HSPA4P34932 840 aa15.68■□□□□ 0.1
LDLR-201ENST00000252444 A0A0U1RQG5 324 aaPredicted RBP15.67■□□□□ 0.1
LDLR-201ENST00000252444 DDAH1O94760 285 aa15.67■□□□□ 0.1
LDLR-201ENST00000252444 GIMAP6Q6P9H5 292 aa15.67■□□□□ 0.1
LDLR-201ENST00000252444 STK11IPQ8N1F8 1099 aa15.67■□□□□ 0.1
LDLR-201ENST00000252444 KIF2AO00139 706 aaPredicted RBP15.67■□□□□ 0.1
LDLR-201ENST00000252444 CCDC102BQ68D86 513 aa15.67■□□□□ 0.1
LDLR-201ENST00000252444 SMARCC2Q8TAQ2 1214 aa15.67■□□□□ 0.1
LDLR-201ENST00000252444 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.66■□□□□ 0.1
LDLR-201ENST00000252444 RIMBP2O15034 1052 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms