RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 NCLP19338 710 aaKnown RBP20.53■□□□□ 0.88
VRK1-201ENST00000216639 APOBRQ0VD83 1088 aa20.53■□□□□ 0.88
VRK1-201ENST00000216639 MB21D2Q8IYB1 491 aaPredicted RBP20.53■□□□□ 0.88
VRK1-201ENST00000216639 IFNL3Q8IZI9 196 aa20.53■□□□□ 0.88
VRK1-201ENST00000216639 ARMT1Q9H993 441 aa20.53■□□□□ 0.88
VRK1-201ENST00000216639 KIF3AQ9Y496 699 aa20.53■□□□□ 0.88
VRK1-201ENST00000216639 PLSCR1O15162 318 aa20.53■□□□□ 0.88
VRK1-201ENST00000216639 PRC1O43663 620 aa20.53■□□□□ 0.88
VRK1-201ENST00000216639 CYP7A1P22680 504 aa20.53■□□□□ 0.88
VRK1-201ENST00000216639 ZBTB22O15209 634 aa20.52■□□□□ 0.88
VRK1-201ENST00000216639 SCRN1Q12765 414 aa20.52■□□□□ 0.88
VRK1-201ENST00000216639 CSPP1Q1MSJ5 1256 aa20.52■□□□□ 0.88
VRK1-201ENST00000216639 LEMD3Q9Y2U8 911 aa20.52■□□□□ 0.88
VRK1-201ENST00000216639 EVCP57679 992 aa20.51■□□□□ 0.87
VRK1-201ENST00000216639 HMGN5P82970 282 aaKnown RBP20.51■□□□□ 0.87
VRK1-201ENST00000216639 TMED8Q6PL24 325 aaPredicted RBP20.51■□□□□ 0.87
VRK1-201ENST00000216639 CHST3Q7LGC8 479 aa20.51■□□□□ 0.87
VRK1-201ENST00000216639 RBM17Q96I25 401 aaKnown RBP20.51■□□□□ 0.87
VRK1-201ENST00000216639 ANKIB1Q9P2G1 1089 aa20.51■□□□□ 0.87
VRK1-201ENST00000216639 NAP1L2Q9ULW6 460 aaPredicted RBP20.51■□□□□ 0.87
VRK1-201ENST00000216639 SLC4A4Q9Y6R1 1079 aa20.51■□□□□ 0.87
VRK1-201ENST00000216639 WTIPA6NIX2 430 aaPredicted RBP20.5■□□□□ 0.87
VRK1-201ENST00000216639 PROM2Q8N271 834 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 FAM184AQ8NB25 1140 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 COL1A1P02452 1464 aaPredicted RBP20.5■□□□□ 0.87
VRK1-201ENST00000216639 MAGEB6P1A0A0J9YX57 407 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 PDIA3P30101 505 aaKnown RBP20.5■□□□□ 0.87
VRK1-201ENST00000216639 TDO2P48775 406 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 FOXD4L6Q3SYB3 417 aaPredicted RBP20.5■□□□□ 0.87
VRK1-201ENST00000216639 CRY2Q49AN0 593 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 FOXD4L3Q6VB84 417 aaPredicted RBP20.5■□□□□ 0.87
VRK1-201ENST00000216639 LCORLQ8N3X6 602 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 TMEM87AQ8NBN3 555 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 SMARCC2Q8TAQ2 1214 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 CHAMP1Q96JM3 812 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 TFCP2L1Q9NZI6 479 aa20.5■□□□□ 0.87
VRK1-201ENST00000216639 XDHP47989 1333 aa20.49■□□□□ 0.87
VRK1-201ENST00000216639 GSG1L2A8MUP6 293 aa20.49■□□□□ 0.87
VRK1-201ENST00000216639 APBA3O96018 575 aa20.49■□□□□ 0.87
VRK1-201ENST00000216639 RXRBP28702 533 aa20.49■□□□□ 0.87
VRK1-201ENST00000216639 CNNM2Q9H8M5 875 aa20.49■□□□□ 0.87
VRK1-201ENST00000216639 FSD2A1L4K1 749 aa20.48■□□□□ 0.87
VRK1-201ENST00000216639 DHX16O60231 1041 aaKnown RBP20.48■□□□□ 0.87
VRK1-201ENST00000216639 IGSF3O75054 1194 aa20.48■□□□□ 0.87
VRK1-201ENST00000216639 KLRK1P26718 216 aa20.48■□□□□ 0.87
VRK1-201ENST00000216639 NAA16Q6N069 864 aaPredicted RBP20.48■□□□□ 0.87
VRK1-201ENST00000216639 TBC1D10CQ8IV04 446 aa20.48■□□□□ 0.87
VRK1-201ENST00000216639 MIGA1Q8NAN2 632 aa20.48■□□□□ 0.87
VRK1-201ENST00000216639 NBPF3Q9H094 633 aa20.48■□□□□ 0.87
VRK1-201ENST00000216639 EPB41L4AQ9HCS5 686 aaPredicted RBP20.48■□□□□ 0.87
VRK1-201ENST00000216639 JAK2O60674 1132 aa20.47■□□□□ 0.87
VRK1-201ENST00000216639 CAVIN1Q6NZI2 390 aaKnown RBP20.47■□□□□ 0.87
VRK1-201ENST00000216639 FLAD1Q8NFF5 587 aa20.47■□□□□ 0.87
VRK1-201ENST00000216639 GPT2Q8TD30 523 aa20.47■□□□□ 0.87
VRK1-201ENST00000216639 POLRMTO00411 1230 aaKnown RBP20.47■□□□□ 0.87
VRK1-201ENST00000216639 ANTXR2P58335 489 aa20.47■□□□□ 0.87
VRK1-201ENST00000216639 CCT2P78371 535 aaKnown RBP20.47■□□□□ 0.87
VRK1-201ENST00000216639 SPTY2D1Q68D10 685 aaPredicted RBP20.47■□□□□ 0.87
VRK1-201ENST00000216639 USP48Q86UV5 1035 aa20.47■□□□□ 0.87
VRK1-201ENST00000216639 NSUN7Q8NE18 718 aaKnown RBP20.47■□□□□ 0.87
VRK1-201ENST00000216639 TMEM87BQ96K49 555 aa20.47■□□□□ 0.87
VRK1-201ENST00000216639 KRT23Q9C075 422 aa20.47■□□□□ 0.87
VRK1-201ENST00000216639 MYH13Q9UKX3 1938 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 KLF18A0A0U1RQI7 1052 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 H3BQV1 296 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 BBOX1O75936 387 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 IFFO2Q5TF58 517 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 CDC37L1Q7L3B6 337 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 NLGN1Q8N2Q7 840 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 ANGEL1Q9UNK9 670 aaKnown RBP20.46■□□□□ 0.87
VRK1-201ENST00000216639 CNPY2Q9Y2B0 182 aa20.46■□□□□ 0.87
VRK1-201ENST00000216639 PTPDC1A2A3K4 754 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 PRKAB2O43741 272 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 DTNBO60941 627 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 DDR1Q08345 913 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 AKNAD1Q5T1N1 836 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 MFSD6Q6ZSS7 791 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 ZNF804AQ7Z570 1209 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 SYAP1Q96A49 352 aaPredicted RBP20.45■□□□□ 0.86
VRK1-201ENST00000216639 DDX11Q96FC9 970 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 RNF41Q9H4P4 317 aaPredicted RBP20.45■□□□□ 0.86
VRK1-201ENST00000216639 IRS2Q9Y4H2 1338 aa20.45■□□□□ 0.86
VRK1-201ENST00000216639 HOXA10P31260 410 aaPredicted RBP20.44■□□□□ 0.86
VRK1-201ENST00000216639 CHAF1AQ13111 956 aaPredicted RBP20.44■□□□□ 0.86
VRK1-201ENST00000216639 C15orf52Q6ZUT6 534 aaKnown RBP20.44■□□□□ 0.86
VRK1-201ENST00000216639 AKT1S1Q96B36 256 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 TIAM2Q8IVF5 1701 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 GOLGA8BA8MQT2 603 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 B4E1Z4 1266 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 ATP2B4P23634 1241 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 MRE11P49959 708 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 KRT85P78386 507 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 TMC4Q7Z404 712 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 ADGRA1Q86SQ6 560 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 STAG1Q8WVM7 1258 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 CRAMP1Q96RY5 1269 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 RIOK1Q9BRS2 568 aaKnown RBP20.44■□□□□ 0.86
VRK1-201ENST00000216639 GDPD2Q9HCC8 539 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 CACNA1SQ13698 1873 aa20.44■□□□□ 0.86
VRK1-201ENST00000216639 DNM1Q05193 864 aaKnown RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms