RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 CrcpO35427 148 aa18.73■□□□□ 0.59
Trim28-201ENSMUST00000005705 Cyp2d9P11714 504 aa18.73■□□□□ 0.59
Trim28-201ENSMUST00000005705 Fam213aQ9CYH2 218 aa18.73■□□□□ 0.59
Trim28-201ENSMUST00000005705 IcoslgQ9JHJ8 322 aa18.73■□□□□ 0.59
Trim28-201ENSMUST00000005705 Atp12aQ9Z1W8 1035 aa18.73■□□□□ 0.59
Trim28-201ENSMUST00000005705 Usp42B2RQC2 1324 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Gm10134F6ZQC6 126 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Dctn1O08788 1281 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 HdgfP51859 237 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Psmb7P70195 277 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Edrf1Q6GQV7 1239 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Gnl2Q99LH1 728 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Mrvi1Q9WUX5 899 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Tcof1O08784 1320 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 LtkP08923 888 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ctdspl2Q8BG15 465 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Chaf1aQ9QWF0 911 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 PnnO35691 725 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Zbtb7aO88939 569 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Sptlc2P97363 560 aaKnown RBP18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Uri1Q3TLD5 531 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Tmem59lQ7TNI2 337 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Stxbp4Q9WV89 557 aa18.72■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ftl2P49945 183 aa18.71■□□□□ 0.59
Trim28-201ENSMUST00000005705 Igsf3Q6ZQA6 1194 aa18.71■□□□□ 0.59
Trim28-201ENSMUST00000005705 Arl8aQ8VEH3 186 aa18.71■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ubn2Q80WC1 1314 aa18.71■□□□□ 0.59
Trim28-201ENSMUST00000005705 Grin1P35438 938 aa18.71■□□□□ 0.59
Trim28-201ENSMUST00000005705 Necab1Q8BG18 352 aa18.71■□□□□ 0.59
Trim28-201ENSMUST00000005705 Rsph10bE9PYQ0 876 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Morc2aQ69ZX6 1030 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Spag5Q7TME2 1165 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Zfp202Q8C879 641 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Trim52Q8CDV4 233 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Cyp26a1O55127 497 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Dusp9Q7TNL7 452 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Dnaaf4Q8R368 420 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Casp1P29452 402 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Miga2Q8BK03 593 aa18.7■□□□□ 0.58
Trim28-201ENSMUST00000005705 Pet2A2AHY8 747 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Anks1aP59672 1150 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Rtel1Q0VGM9 1203 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Tubb6Q922F4 447 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Sptlc3Q8BG54 563 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Ces1dQ8VCT4 565 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 BrapQ99MP8 591 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Abcb6Q9DC29 842 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Ercc4Q9QZD4 917 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Suclg2Q9Z2I8 433 aa18.69■□□□□ 0.58
Trim28-201ENSMUST00000005705 Metap2O08663 478 aaKnown RBP18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 C87499Q3UX49 493 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 Kiaa1524Q8BWY9 907 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 Tfcp2Q9ERA0 502 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 Bin2D3Z6Q9 489 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 TrdnE9Q9K5 693 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 Slc1a4O35874 532 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 Pfkfb1P70266 471 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 Asap2Q7SIG6 958 aa18.68■□□□□ 0.58
Trim28-201ENSMUST00000005705 Mns1Q61884 491 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Ppp4r3aQ6P2K6 820 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Smarcc2Q6PDG5 1213 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Slit1Q80TR4 1531 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Tjp1P39447 1745 aaKnown RBP18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 AK157302I3ITR1 129 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 TsksO54887 585 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Exosc10P56960 887 aaKnown RBP18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Ift122Q6NWV3 1182 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Otop3Q80UF9 577 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Isca1Q9D924 129 aa18.67■□□□□ 0.58
Trim28-201ENSMUST00000005705 Nlrp1aQ2LKU9 1182 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 RubcnlQ3TD16 648 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Tmem109Q3UBX0 243 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Nlrp9aQ66X03 949 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Eaf2Q91ZD6 262 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Lonp2Q9DBN5 852 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Krt24A1L317 512 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Cops6O88545 324 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Itga6Q61739 1091 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Usp49Q6P9L4 685 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Prdm4Q80V63 803 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Rbm28Q8CGC6 750 aaKnown RBP18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 MbipQ99LQ1 341 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Desi2Q9D291 194 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Zbtb43Q9DAI4 467 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Kmt5bQ3U8K7 883 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Pex1Q5BL07 1284 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Map10Q8BJS7 891 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Zbtb1Q91VL9 713 aa18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Gtpbp4Q99ME9 634 aaKnown RBP18.66■□□□□ 0.58
Trim28-201ENSMUST00000005705 Zfp142G5E869 1843 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 NefhP19246 1090 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 Glis3Q6XP49 780 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 Cdca8Q8BHX3 289 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 Tab2Q99K90 693 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 Tnks1bp1P58871 1720 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 Gm12185Q5NCB2 835 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 Shank2Q80Z38 1476 aa18.65■□□□□ 0.58
Trim28-201ENSMUST00000005705 Myo1bP46735 1107 aa18.64■□□□□ 0.58
Trim28-201ENSMUST00000005705 Anp32eP97822 260 aaKnown RBP18.64■□□□□ 0.58
Trim28-201ENSMUST00000005705 Panx2Q6IMP4 677 aa18.64■□□□□ 0.58
Retrieved 100 of 22,080 RNA–protein pairs in 13 ms