RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TRBV6-7A0A0A0MS04 114 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 J3QRK9 145 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 ARL6IP5O75915 188 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 PRH1P02810 166 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 FCGR3AP08637 254 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 GNB3P16520 340 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 MAP2K4P45985 399 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 SERPINB10P48595 397 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 MRPS15P82914 257 aaKnown RBP12.29□□□□□ -0.44
CLN3-246ENST00000636228 ZNF343Q6P1L6 599 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 OR10J5Q8NHC4 309 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 ISOC1Q96CN7 298 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 RAB3CQ96E17 227 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 CCDC90BQ9GZT6 254 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 VCXQ9H320 206 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 RBM7Q9Y580 266 aaKnown RBP12.29□□□□□ -0.44
CLN3-246ENST00000636228 V9GY05 133 aa12.29□□□□□ -0.44
CLN3-246ENST00000636228 H0Y980 276 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 TNXAQ16473 311 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 RPEL1Q2QD12 228 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 TMEM177Q53S58 311 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 SPATA25Q9BR10 227 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 THAP7Q9BT49 309 aaPredicted RBP12.28□□□□□ -0.44
CLN3-246ENST00000636228 CABLES2Q9BTV7 478 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 DUSP21Q9H596 190 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 TUBA4BQ9H853 241 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 RETNQ9HD89 108 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 RAB22AQ9UL26 194 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 TPRKBQ9Y3C4 175 aa12.28□□□□□ -0.44
CLN3-246ENST00000636228 BIRC6Q9NR09 4857 aa12.27□□□□□ -0.44
CLN3-246ENST00000636228 IGKV1D-8A0A087WSZ0 117 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 A0A0B4J203 849 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 RGS10O43665 173 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 AADACP22760 399 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 AQP4P55087 323 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 OR10A3P58181 314 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 TAGLNQ01995 201 aaKnown RBP12.27□□□□□ -0.45
CLN3-246ENST00000636228 MLLT11Q13015 90 aaPredicted RBP12.27□□□□□ -0.45
CLN3-246ENST00000636228 TRAM1Q15629 374 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 PRSS8Q16651 343 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 RTL8BQ17RB0 113 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 ADAD2Q8NCV1 583 aaKnown RBP12.27□□□□□ -0.45
CLN3-246ENST00000636228 OR10R2Q8NGX6 335 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 TMEM68Q96MH6 324 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 ELF5Q9UKW6 265 aaPredicted RBP12.27□□□□□ -0.45
CLN3-246ENST00000636228 HYDINQ4G0P3 5121 aa12.27□□□□□ -0.45
CLN3-246ENST00000636228 SHISA3A0PJX4 238 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 LINC00473A8K010 186 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 MPPED1O15442 326 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 BRI3O95415 125 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 CRYZL1O95825 349 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 CBX3Q13185 183 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 TATDN3Q17R31 274 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 GTSCR1Q86UQ5 136 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 ACOT12Q8WYK0 555 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 DDB2Q92466 427 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 USMG5Q96IX5 58 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 MGLLQ99685 303 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 GINS4Q9BRT9 223 aa12.26□□□□□ -0.45
CLN3-246ENST00000636228 MFNGO00587 321 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 OR9G9P0C7N8 305 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 EDN2P20800 178 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 PSMA1P25786 263 aaKnown RBP12.25□□□□□ -0.45
CLN3-246ENST00000636228 DUTP33316 252 aaKnown RBP12.25□□□□□ -0.45
CLN3-246ENST00000636228 UBE2KP61086 200 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 ZNF45Q02386 682 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 VMA21Q3ZAQ7 101 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 LCN12Q6JVE5 192 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 TEX45Q8NA69 505 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 SRSF12Q8WXF0 261 aaKnown RBP12.25□□□□□ -0.45
CLN3-246ENST00000636228 FAM110AQ9BQ89 295 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 PLEKHA3Q9HB20 300 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 ACOT13Q9NPJ3 140 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 AKIP1Q9NQ31 210 aa12.25□□□□□ -0.45
CLN3-246ENST00000636228 RAB27BO00194 218 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 BMPR1BO00238 502 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 IFNA6P05013 189 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 RRASP10301 218 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 MECP2P51608 486 aaKnown RBP12.24□□□□□ -0.45
CLN3-246ENST00000636228 RHOGP84095 191 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 ARFRP1Q13795 201 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 EXOSC2Q13868 293 aaKnown RBP12.24□□□□□ -0.45
CLN3-246ENST00000636228 C10orf55Q5SWW7 151 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 C19orf35Q6ZS72 473 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 Q8N402 240 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 SNAPC3Q92966 411 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 VCX3BQ9H321 246 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 ZNF430Q9H8G1 570 aaPredicted RBP12.24□□□□□ -0.45
CLN3-246ENST00000636228 SELENOKQ9Y6D0 94 aa12.24□□□□□ -0.45
CLN3-246ENST00000636228 OR2A4O95047 310 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 HIST1H1DP16402 221 aaKnown RBP12.23□□□□□ -0.45
CLN3-246ENST00000636228 CRHBPP24387 322 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 GADD45AP24522 165 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 TALDO1P37837 337 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 PSMD7P51665 324 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 CD81P60033 236 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 ATP5G2Q06055 141 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 SSX1Q16384 188 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 CD300EQ496F6 205 aaPredicted RBP12.23□□□□□ -0.45
CLN3-246ENST00000636228 OR2B11Q5JQS5 317 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms