RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 MFSD4AQ8N468 514 aa16.06■□□□□ 0.16
PTCD3-220ENST00000627371 WIPF2Q8TF74 440 aaPredicted RBP16.06■□□□□ 0.16
PTCD3-220ENST00000627371 HARBI1Q96MB7 349 aa16.06■□□□□ 0.16
PTCD3-220ENST00000627371 KCNAB3O43448 404 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 TNFSF12O43508 249 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 RAB3DO95716 219 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 HLA-DRB1P01911 266 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 LGALS7P47929 136 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 ZNF79Q15937 498 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 AADACL3Q5VUY0 350 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 OR4D10Q8NGI6 311 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 TCTEX1D2Q8WW35 142 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 GPHA2Q96T91 129 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 HSPB9Q9BQS6 159 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 FBXL15Q9H469 300 aa16.05■□□□□ 0.16
PTCD3-220ENST00000627371 TET2Q6N021 2002 aaPredicted RBP16.05■□□□□ 0.16
PTCD3-220ENST00000627371 SHOXO15266 292 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 FCGR3BO75015 233 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 CRYZL1O95825 349 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 IGLV2-23P01705 113 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 MEF2DQ14814 521 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 PSG5Q15238 335 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 PYDC2Q56P42 97 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 LIN54Q6MZP7 749 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 LHFPL1Q86WI0 220 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 FOXRED2Q8IWF2 684 aa16.04■□□□□ 0.16
PTCD3-220ENST00000627371 OSR1Q8TAX0 266 aaPredicted RBP16.04■□□□□ 0.16
PTCD3-220ENST00000627371 METTL1Q9UBP6 276 aaKnown RBP16.04■□□□□ 0.16
PTCD3-220ENST00000627371 ANKRD20A5PA0PJZ0 165 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 LINC01548A6NM66 108 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 AP4M1O00189 453 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 AKAIN1P0CW23 69 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 KIR2DS2P43631 304 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 UCP3P55916 312 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 CATR1Q13166 79 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 PLGLAQ15195 96 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 OR2B11Q5JQS5 317 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 LPCAT3Q6P1A2 487 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 OR4S2Q8NH73 311 aa16.03■□□□□ 0.16
PTCD3-220ENST00000627371 THAP7Q9BT49 309 aaPredicted RBP16.03■□□□□ 0.16
PTCD3-220ENST00000627371 IGHV7-81A0A0B4J1V7 117 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 SRRM4A7MD48 611 aaKnown RBP16.02■□□□□ 0.16
PTCD3-220ENST00000627371 GPR31O00270 319 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 SLC25A17O43808 307 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 BRWD1-AS2P59051 145 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 CMTM1Q8IZ96 169 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 Q8N402 240 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 CHPT1Q8WUD6 406 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 TRIM63Q969Q1 353 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 NOL4LQ96MY1 436 aaPredicted RBP16.02■□□□□ 0.16
PTCD3-220ENST00000627371 RSRP1Q9BUV0 290 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 BATF3Q9NR55 127 aa16.02■□□□□ 0.16
PTCD3-220ENST00000627371 TNCP24821 2201 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 ZNF735P0CB33 412 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 CNPY1Q3B7I2 92 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 FAAP20Q6NZ36 180 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 CENPVQ7Z7K6 275 aaPredicted RBP16.01■□□□□ 0.15
PTCD3-220ENST00000627371 SLC38A6Q8IZM9 456 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 STPG2Q8N412 459 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 OR4C16Q8NGL9 310 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 SRRQ9GZT4 340 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 TPSG1Q9NRR2 321 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 ZNF580Q9UK33 172 aa16.01■□□□□ 0.15
PTCD3-220ENST00000627371 RBFOX2O43251 390 aaKnown RBP eCLIP16■□□□□ 0.15
PTCD3-220ENST00000627371 FBXO24O75426 580 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 PGLYRP1O75594 196 aaPredicted RBP16■□□□□ 0.15
PTCD3-220ENST00000627371 RLN1P04808 185 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 IGF1P05019 195 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 CRYGBP07316 175 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 UBE2KP61086 200 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 VMA21Q3ZAQ7 101 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 OR5AU1Q8NGC0 362 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 OR51H1Q8NH63 302 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 TERB2Q8NHR7 220 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 OR51J1Q9H342 316 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 LINC00527Q9UJ94 153 aa16■□□□□ 0.15
PTCD3-220ENST00000627371 PSMB11A5LHX3 300 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 DISC1C4P0D8 188 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 FCN1O00602 326 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 RAMP3O60896 148 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 NDPQ00604 133 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 SCGB2B2Q4G0G5 96 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 PPP1R27Q86WC6 154 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 SPAG16Q8N0X2 631 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 C11orf44Q8N8P7 122 aa15.99■□□□□ 0.15
PTCD3-220ENST00000627371 TRRAPQ9Y4A5 3859 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 ATP6V0E1O15342 81 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 CA2P00918 260 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 SAA1P0DJI8 122 aaPredicted RBP15.98■□□□□ 0.15
PTCD3-220ENST00000627371 CD28P10747 220 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 PGAM2P15259 253 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 S100GP29377 79 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 PPP5CP53041 499 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 CX3CL1P78423 397 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 KLF9Q13886 244 aaPredicted RBP15.98■□□□□ 0.15
PTCD3-220ENST00000627371 PHLDA2Q53GA4 152 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 C10orf99Q6UWK7 81 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 TEX45Q8NA69 505 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 POC5Q8NA72 575 aa15.98■□□□□ 0.15
PTCD3-220ENST00000627371 CD300LFQ8TDQ1 290 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms