RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, humanhuman

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-208ENST00000604743 NECAP2Q9NVZ3 263 aa11.26□□□□□ -0.61
TUBE1-208ENST00000604743 ZNF580Q9UK33 172 aa11.26□□□□□ -0.61
TUBE1-208ENST00000604743 RBMX2Q9Y388 322 aaKnown RBP11.26□□□□□ -0.61
TUBE1-208ENST00000604743 TNCP24821 2201 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 SMIM31A0A1B0GVY4 71 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 SRRM4A7MD48 611 aaKnown RBP11.25□□□□□ -0.61
TUBE1-208ENST00000604743 HPGDSO60760 199 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 GABARAPO95166 117 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 CNIH1O95406 144 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 EGR2P11161 476 aaPredicted RBP11.25□□□□□ -0.61
TUBE1-208ENST00000604743 FXYD4P59646 89 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 RPL30P62888 115 aaKnown RBP11.25□□□□□ -0.61
TUBE1-208ENST00000604743 TMEM267Q0VDI3 215 aaPredicted RBP11.25□□□□□ -0.61
TUBE1-208ENST00000604743 PJVKQ0ZLH3 352 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 FXYD3Q14802 87 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 CTF1Q16619 201 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 TMEM177Q53S58 311 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 ZNF562Q6V9R5 426 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 KCTD9Q7L273 389 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 RNF152Q8N8N0 203 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 MINDY2Q8NBR6 621 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 LFNGQ8NES3 379 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 TCTEX1D2Q8WW35 142 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 DDB2Q92466 427 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 ARPC1AQ92747 370 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 OR5B12Q96R08 314 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 GPHA2Q96T91 129 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 NUBP2Q9Y5Y2 271 aa11.25□□□□□ -0.61
TUBE1-208ENST00000604743 FAM25AB3EWG3 89 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 FAM25CB3EWG5 89 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 FAM25GB3EWG6 89 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 CCL24O00175 119 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 ARPC1BO15143 372 aaKnown RBP11.24□□□□□ -0.61
TUBE1-208ENST00000604743 TNFSF12O43508 249 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 SLC22A5O76082 557 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 IGLV1-40P01703 118 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 IGLV2-14P01704 120 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 SLC6A1P30531 599 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 PRSS3P35030 304 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 ALDH3B2P48448 385 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 RAB9AP51151 201 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 CDK10Q15131 360 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 VMA21Q3ZAQ7 101 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 ACTBL2Q562R1 376 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 MZT2AQ6P582 158 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 IDO2Q6ZQW0 420 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 OR5AP2Q8NGF4 316 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 ACOT12Q8WYK0 555 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 GNB4Q9HAV0 340 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 CCL28Q9NRJ3 127 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 TAS2R8Q9NYW2 309 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 FOXA2Q9Y261 457 aaPredicted RBP11.24□□□□□ -0.61
TUBE1-208ENST00000604743 PRELID3BQ9Y3B1 194 aa11.24□□□□□ -0.61
TUBE1-208ENST00000604743 SOX15O60248 233 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 PPYP01298 95 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 APOA1P02647 267 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 PMP2P02689 132 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 CRYGBP07316 175 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 ELK1P19419 428 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 CRIP2P52943 208 aaPredicted RBP11.23□□□□□ -0.61
TUBE1-208ENST00000604743 FOXB2Q5VYV0 432 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 TMEM17Q86X19 198 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 SNX29P2Q8IUI4 249 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 CLVS1Q8IUQ0 354 aaPredicted RBP11.23□□□□□ -0.61
TUBE1-208ENST00000604743 ZNF491Q8N8L2 437 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 C4orf3Q8WVX3 66 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 RCC1LQ96I51 464 aaKnown RBP11.23□□□□□ -0.61
TUBE1-208ENST00000604743 MS4A10Q96PG2 267 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 P2RX4Q99571 388 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 SLC5A7Q9GZV3 580 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 EHFQ9NZC4 300 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 VSIG4Q9Y279 399 aa11.23□□□□□ -0.61
TUBE1-208ENST00000604743 ZNF182P17025 639 aaPredicted RBP11.22□□□□□ -0.61
TUBE1-208ENST00000604743 RFX2P48378 723 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 KIAA0141Q14154 515 aaPredicted RBP11.22□□□□□ -0.61
TUBE1-208ENST00000604743 TNXAQ16473 311 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 AKIRIN2Q53H80 203 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 C19orf54Q5BKX5 351 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 KPRPQ5T749 579 aaPredicted RBP11.22□□□□□ -0.61
TUBE1-208ENST00000604743 MFSD4AQ8N468 514 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 TCTEX1D1Q8N7M0 179 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 OR5T1Q8NG75 326 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 OR11H1Q8NG94 326 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 OR5H2Q8NGV7 314 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 OSR1Q8TAX0 266 aaPredicted RBP11.22□□□□□ -0.61
TUBE1-208ENST00000604743 AP3S1Q92572 193 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 UBE2E2Q96LR5 201 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 CMTM3Q96MX0 182 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 PHB2Q99623 299 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 HSD17B10Q99714 261 aaKnown RBP11.22□□□□□ -0.61
TUBE1-208ENST00000604743 ZNF355PQ9NSJ1 428 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 DNAH3Q8TD57 4116 aa11.22□□□□□ -0.61
TUBE1-208ENST00000604743 APELAP0DMC3 54 aa11.21□□□□□ -0.61
TUBE1-208ENST00000604743 HLA-DMAP28067 261 aa11.21□□□□□ -0.61
TUBE1-208ENST00000604743 CD40LGP29965 261 aa11.21□□□□□ -0.61
TUBE1-208ENST00000604743 HOXD3P31249 432 aaPredicted RBP11.21□□□□□ -0.61
TUBE1-208ENST00000604743 UBE2KP61086 200 aa11.21□□□□□ -0.61
TUBE1-208ENST00000604743 HERV-K104P61576 105 aa11.21□□□□□ -0.61
TUBE1-208ENST00000604743 SSBP2P81877 361 aaPredicted RBP11.21□□□□□ -0.61
TUBE1-208ENST00000604743 SPCS2Q15005 226 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms