RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 RITA1Q96K30 269 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 IGHV1-3A0A0C4DH29 117 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 IGKV1-5P01602 117 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 IL3RAP26951 378 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 SAA4P35542 130 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 FBLN7Q53RD9 439 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 CYB5R2Q6BCY4 276 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 VKORC1L1Q8N0U8 176 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 TLN2Q9Y4G6 2542 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 A0A1W2PPI3 338 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 LEUTXA8MZ59 168 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 CRYZL1O95825 349 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 G6PCP35575 357 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 MOB3BQ86TA1 216 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 AKAP14Q86UN6 197 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 OR5AN1Q8NGI8 311 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 RBPMSQ93062 196 aaKnown RBP20.26■□□□□ 0.83
SHMT1-207ENST00000580002 ZNF436Q9C0F3 470 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-207ENST00000580002 SLC35D1Q9NTN3 355 aa20.26■□□□□ 0.83
SHMT1-207ENST00000580002 AMMECR1Q9Y4X0 333 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-207ENST00000580002 NPFFO15130 113 aa20.25■□□□□ 0.83
SHMT1-207ENST00000580002 GAPDHP04406 335 aaKnown RBP20.25■□□□□ 0.83
SHMT1-207ENST00000580002 TRAPPC2P0DI81 140 aa20.25■□□□□ 0.83
SHMT1-207ENST00000580002 TRAPPC2BP0DI82 140 aa20.25■□□□□ 0.83
SHMT1-207ENST00000580002 CD24P25063 80 aa20.25■□□□□ 0.83
SHMT1-207ENST00000580002 Q5BKY6 102 aa20.25■□□□□ 0.83
SHMT1-207ENST00000580002 OR5M8Q8NGP6 311 aa20.25■□□□□ 0.83
SHMT1-207ENST00000580002 PRELID3BQ9Y3B1 194 aa20.25■□□□□ 0.83
SHMT1-207ENST00000580002 IGHV1-69DA0A0B4J2H0 117 aa20.24■□□□□ 0.83
SHMT1-207ENST00000580002 KRASP01116 189 aa20.24■□□□□ 0.83
SHMT1-207ENST00000580002 IGHV1-69P01742 117 aa20.24■□□□□ 0.83
SHMT1-207ENST00000580002 HLA-GP17693 338 aa20.24■□□□□ 0.83
SHMT1-207ENST00000580002 LGALS4P56470 323 aa20.24■□□□□ 0.83
SHMT1-207ENST00000580002 FAM71F2Q6NXP2 309 aa20.24■□□□□ 0.83
SHMT1-207ENST00000580002 RAB18Q9NP72 206 aa20.24■□□□□ 0.83
SHMT1-207ENST00000580002 C5orf51A6NDU8 294 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 SRRM4A7MD48 611 aaKnown RBP20.23■□□□□ 0.83
SHMT1-207ENST00000580002 GATA3P23771 443 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 KRTAP1-1Q07627 177 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 Q6ZRM9 215 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 SSX9Q7RTT3 188 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 GPR146Q96CH1 333 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 ADTRPQ96IZ2 230 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 H7C2Y5 167 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 TIMM23O14925 209 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 RAB13P51153 203 aa20.23■□□□□ 0.83
SHMT1-207ENST00000580002 CYSRT1A8MQ03 144 aa20.22■□□□□ 0.83
SHMT1-207ENST00000580002 B3GALNT1O75752 331 aa20.22■□□□□ 0.83
SHMT1-207ENST00000580002 OR2A4O95047 310 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 EPHA1P21709 976 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 NMSQ5H8A3 153 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 CFHR4Q92496 578 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 OR2A7Q96R45 310 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 SETXQ7Z333 2677 aaKnown RBP20.21■□□□□ 0.83
SHMT1-207ENST00000580002 SRPXP78539 464 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 MINOS1Q5TGZ0 78 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 GPR157Q5UAW9 335 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 IL22RA2Q969J5 263 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 R3HDM4Q96D70 268 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 MINOS1-NBL1R4GNA1 71 aa20.21■□□□□ 0.83
SHMT1-207ENST00000580002 HPRT1P00492 218 aa20.2■□□□□ 0.82
SHMT1-207ENST00000580002 GSG1LQ6UXU4 331 aa20.2■□□□□ 0.82
SHMT1-207ENST00000580002 TCTEX1D1Q8N7M0 179 aa20.2■□□□□ 0.82
SHMT1-207ENST00000580002 OR4S2Q8NH73 311 aa20.2■□□□□ 0.82
SHMT1-207ENST00000580002 CD300LFQ8TDQ1 290 aa20.2■□□□□ 0.82
SHMT1-207ENST00000580002 PLEKHA2Q9HB19 425 aa20.2■□□□□ 0.82
SHMT1-207ENST00000580002 GSKIPQ9P0R6 139 aa20.2■□□□□ 0.82
SHMT1-207ENST00000580002 TBL2Q9Y4P3 447 aaKnown RBP20.2■□□□□ 0.82
SHMT1-207ENST00000580002 TRAV3A0A0B4J244 114 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 A0A0U1RQK1 487 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 RBFOX2O43251 390 aaKnown RBP eCLIP20.19■□□□□ 0.82
SHMT1-207ENST00000580002 CNTFRP26992 372 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 CEACAM3P40198 252 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 AKR1C2P52895 323 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 TAGLNQ01995 201 aaKnown RBP20.19■□□□□ 0.82
SHMT1-207ENST00000580002 IAH1Q2TAA2 248 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-207ENST00000580002 MIDNQ504T8 468 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 FAM120AOSQ5T036 256 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 SMR3AQ99954 134 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 PDCD10Q9BUL8 212 aa20.19■□□□□ 0.82
SHMT1-207ENST00000580002 G3V3Q6 166 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 J3QLI3 93 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 NXPH3O95157 252 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 APOA2P02652 100 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 P0C879 139 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 VDAC1P21796 283 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 KIR2DS2P43631 304 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 FAM212BQ9NTI7 297 aaPredicted RBP20.18■□□□□ 0.82
SHMT1-207ENST00000580002 NSG2Q9Y328 171 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 WASHC3Q9Y3C0 194 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 TMED3Q9Y3Q3 217 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 ANK3Q12955 4377 aaKnown RBP20.18■□□□□ 0.82
SHMT1-207ENST00000580002 MARCH11A6NNE9 402 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 IFNA21P01568 189 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 RTL8BQ17RB0 113 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 BCL6BQ8N143 479 aaPredicted RBP20.18■□□□□ 0.82
SHMT1-207ENST00000580002 C22orf15Q8WYQ4 148 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 MALSU1Q96EH3 234 aa20.18■□□□□ 0.82
SHMT1-207ENST00000580002 BOLA2-SMG1P6H3BVE0 249 aa20.17■□□□□ 0.82
SHMT1-207ENST00000580002 OR9G9P0C7N8 305 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms