RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 BRI3O95415 125 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 CRYGBP07316 175 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 GALP22466 123 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 MYL9P24844 172 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 SERPINB10P48595 397 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 PJVKQ0ZLH3 352 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 KLF5Q13887 457 aaPredicted RBP11.4□□□□□ -0.58
CLN3-236ENST00000568558 C2orf76Q3KRA6 126 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 PLAC9Q5JTB6 97 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 OR56B1Q8NGI3 324 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 OR4A4PQ8NGN8 299 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 OR9G4Q8NGQ1 327 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 FAM3DQ96BQ1 224 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 RNF167Q9H6Y7 350 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 SDHAF2Q9NX18 166 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 GAR1Q9NY12 217 aaKnown RBP11.4□□□□□ -0.58
CLN3-236ENST00000568558 TMEM272A0A1B0GTI8 110 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 IFITM5A6NNB3 132 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 GADD45AP24522 165 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 FGF9P31371 208 aaPredicted RBP11.39□□□□□ -0.59
CLN3-236ENST00000568558 LGALS7P47929 136 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 DEFA5Q01523 94 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 ZFAND6Q6FIF0 208 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 IL34Q6ZMJ4 242 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 ISOC1Q96CN7 298 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 HARBI1Q96MB7 349 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 TMEM68Q96MH6 324 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 CABLES2Q9BTV7 478 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 TINAGL1Q9GZM7 467 aaPredicted RBP11.39□□□□□ -0.59
CLN3-236ENST00000568558 OR2D2Q9H210 308 aa11.39□□□□□ -0.59
CLN3-236ENST00000568558 PLECQ15149 4684 aaKnown RBP11.39□□□□□ -0.59
CLN3-236ENST00000568558 H0Y980 276 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 PDCD5O14737 125 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 FABP7O15540 132 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 CD3GP09693 182 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 RAB3BP20337 219 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 AADACP22760 399 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 SYNJ2BPP57105 145 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 TMEM177Q53S58 311 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 IGSF11Q5DX21 431 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 ZNF343Q6P1L6 599 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 TSPAN14Q8NG11 270 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 C5orf30Q96GV9 206 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 SPATA25Q9BR10 227 aa11.38□□□□□ -0.59
CLN3-236ENST00000568558 THAP7Q9BT49 309 aaPredicted RBP11.38□□□□□ -0.59
CLN3-236ENST00000568558 PEF1Q9UBV8 284 aaKnown RBP11.38□□□□□ -0.59
CLN3-236ENST00000568558 TRBV6-7A0A0A0MS04 114 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 BET1O15155 118 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 SHOXO15266 292 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 TNFAIP8O95379 198 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 TRBV12-3P01733 135 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 FCGR3AP08637 254 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 CLEC2LP0C7M8 214 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 GSTT2P0CG29 244 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 GSTT2BP0CG30 244 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 CD36P16671 472 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 PSMD7P51665 324 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 TAGLNQ01995 201 aaKnown RBP11.37□□□□□ -0.59
CLN3-236ENST00000568558 DYRK1AQ13627 763 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 MRGPRG-AS1Q2M3A8 158 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 BVESQ8NE79 360 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 CENPOQ9BU64 300 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 COA4Q9NYJ1 87 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 ADAM30Q9UKF2 790 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 SSR3Q9UNL2 185 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 KCNK7Q9Y2U2 307 aa11.37□□□□□ -0.59
CLN3-236ENST00000568558 HYDINQ4G0P3 5121 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 A0A087WXM4 84 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 LOC100506127A0A0U1RQW1 187 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 SRRM4A7MD48 611 aaKnown RBP11.36□□□□□ -0.59
CLN3-236ENST00000568558 RBMXL2O75526 392 aaKnown RBP11.36□□□□□ -0.59
CLN3-236ENST00000568558 DIRAS3O95661 229 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 CSN3P07498 182 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 RANBP1P43487 201 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 MRPS15P82914 257 aaKnown RBP11.36□□□□□ -0.59
CLN3-236ENST00000568558 CBX3Q13185 183 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 HAGHQ16775 308 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 OR10J5Q8NHC4 309 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 RAB3CQ96E17 227 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 USMG5Q96IX5 58 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 SIGLEC8Q9NYZ4 499 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 RAB22AQ9UL26 194 aa11.36□□□□□ -0.59
CLN3-236ENST00000568558 BIRC6Q9NR09 4857 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 APELAP0DMC3 54 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 RRASP10301 218 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 SDC2P34741 201 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 TGFBR1P36897 503 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 TATDN3Q17R31 274 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 RTL8BQ17RB0 113 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 RPEL1Q2QD12 228 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 LCN12Q6JVE5 192 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 GTSCR1Q86UQ5 136 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 Q8N402 240 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 ADAD2Q8NCV1 583 aaKnown RBP11.35□□□□□ -0.59
CLN3-236ENST00000568558 MAFIPQ8WZ33 124 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 DDB2Q92466 427 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 YIPF6Q96EC8 236 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 PHB2Q99623 299 aa11.35□□□□□ -0.59
CLN3-236ENST00000568558 IZUMO1RA6ND01 250 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 MSGN1A6NI15 193 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms