RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-223	ENST00000568301	SCN3B	Q9NY72	215 aa		11.44	□□□□□ -0.58
COMMD4-223	ENST00000568301	AK6	Q9Y3D8	172 aa	Known RBP	11.44	□□□□□ -0.58
COMMD4-223	ENST00000568301	TRBV6-7	A0A0A0MS04	114 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	MSGN1	A6NI15	193 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	SRRM4	A7MD48	611 aa	Known RBP	11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	SHOX	O15266	292 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	ATP6V1G2	O95670	118 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	TRBV12-3	P01733	135 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	PSMA1	P25786	263 aa	Known RBP	11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	PSMD7	P51665	324 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	MRPS15	P82914	257 aa	Known RBP	11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	IRF3	Q14653	427 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	RTL8B	Q17RB0	113 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	MRGPRG-AS1	Q2M3A8	158 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	RPEL1	Q2QD12	228 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	TEX45	Q8NA69	505 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	OR2K2	Q8NGT1	345 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	OR10J5	Q8NHC4	309 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	OR2D2	Q9H210	308 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	COA4	Q9NYJ1	87 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	KCNK7	Q9Y2U2	307 aa		11.43	□□□□□ -0.58
COMMD4-223	ENST00000568301	BET1	O15155	118 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	DENR	O43583	198 aa	Known RBP	11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	AIRE	O43918	545 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	CD3G	P09693	182 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	IGSF11	Q5DX21	431 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	LINC00322	Q6ZN03	302 aa	Predicted RBP	11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	ADAD2	Q8NCV1	583 aa	Known RBP	11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	IL17D	Q8TAD2	202 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	CABLES2	Q9BTV7	478 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	CENPO	Q9BU64	300 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	PEMT	Q9UBM1	199 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	ADAM30	Q9UKF2	790 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301	RAB22A	Q9UL26	194 aa		11.42	□□□□□ -0.58
COMMD4-223	ENST00000568301		A0A0B4J203	849 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	JTB	O76095	146 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	OR9G9	P0C7N8	305 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	GSTT2	P0CG29	244 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	GSTT2B	P0CG30	244 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	CLDN12	P56749	244 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	UBE2K	P61086	200 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	PRSS8	Q16651	343 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	LAX1	Q8IWV1	398 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	RAB3C	Q96E17	227 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	ADTRP	Q96IZ2	230 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	PHB2	Q99623	299 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301		V9GY05	133 aa		11.41	□□□□□ -0.58
COMMD4-223	ENST00000568301	SHISA3	A0PJX4	238 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	IZUMO1R	A6ND01	250 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	FAM223B	A6NKX1	122 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	RBMXL2	O75526	392 aa	Known RBP	11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	FCGR3A	P08637	254 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	HSMCR30	P0CW71	290 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	RPS25	P62851	125 aa	Known RBP	11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	DEFA5	Q01523	94 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	VMA21	Q3ZAQ7	101 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	FAM223A	Q8IWN6	122 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	NRG4	Q8WWG1	115 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	SRSF12	Q8WXF0	261 aa	Known RBP	11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	DDB2	Q92466	427 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	C5orf30	Q96GV9	206 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	HIPK2	Q9H2X6	1198 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	DUSP21	Q9H596	190 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	TPRKB	Q9Y3C4	175 aa		11.4	□□□□□ -0.58
COMMD4-223	ENST00000568301	TRBV9	A0A0B4J1U6	114 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	TMEM272	A0A1B0GTI8	110 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	APELA	P0DMC3	54 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	CALR	P27797	417 aa	Known RBP	11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	DUT	P33316	252 aa	Known RBP	11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	RHOG	P84095	191 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	ATP5G2	Q06055	141 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	MLLT11	Q13015	90 aa	Predicted RBP	11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	TNXA	Q16473	311 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	FAM209B	Q5JX69	171 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	OSR1	Q8TAX0	266 aa	Predicted RBP	11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	ACOT13	Q9NPJ3	140 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	AKIP1	Q9NQ31	210 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	ZNF230	Q9UIE0	474 aa	Predicted RBP	11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	RBM7	Q9Y580	266 aa	Known RBP	11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	CEPT1	Q9Y6K0	416 aa		11.39	□□□□□ -0.59
COMMD4-223	ENST00000568301	KMT2A	Q03164	3969 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	RAB27B	O00194	218 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	BMPR1B	O00238	502 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	MPPED1	O15442	326 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	CREBL2	O60519	120 aa	Predicted RBP	11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	CRYZL1	O95825	349 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	GADD45A	P24522	165 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	FABP5	Q01469	135 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	PLA2G7	Q13093	441 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301		Q6ZS49	121 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	NECAP1	Q8NC96	275 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	OR10R2	Q8NGX6	335 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	KCTD12	Q96CX2	325 aa	Known RBP	11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	SPIN2A	Q99865	258 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	SPIN2B	Q9BPZ2	258 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	GINS4	Q9BRT9	223 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	RETN	Q9HD89	108 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	SLC2A8	Q9NY64	477 aa		11.38	□□□□□ -0.59
COMMD4-223	ENST00000568301	LINC00473	A8K010	186 aa		11.37	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms