RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 K7EIL1 84 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 ARPC1BO15143 372 aaKnown RBP12.17□□□□□ -0.46
VPS39-203ENST00000561797 CRYZL1O95825 349 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 HLA-DQB1P01920 261 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 RRASP10301 218 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 EGFEM1PQ0D2K5 195 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 AKIRIN2Q53H80 203 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 ZNF645Q8N7E2 425 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 GVQW1Q8N7I0 195 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 TCTEX1D1Q8N7M0 179 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 BEST4Q8NFU0 473 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 OR1N2Q8NGR9 330 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 DDB2Q92466 427 aa12.17□□□□□ -0.46
VPS39-203ENST00000561797 ALX4Q9H161 411 aaPredicted RBP12.17□□□□□ -0.46
VPS39-203ENST00000561797 A0A0A6YYH2 397 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 IGKV1D-13A0A0B4J2D9 117 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 WI2-2373I1.2A0A1W2PRP0 233 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 A6NJ64 397 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 SRRM4A7MD48 611 aaKnown RBP12.16□□□□□ -0.46
VPS39-203ENST00000561797 TUSC2O75896 110 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 CRYGBP07316 175 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 IGKV1-13P0DP09 117 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 ARPC4P59998 168 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 DEFB121Q5J5C9 76 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 CROCCP3Q8IVE0 287 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 AUNIPQ9H7T9 357 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 ZNF355PQ9NSJ1 428 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 TNCP24821 2201 aa12.16□□□□□ -0.46
VPS39-203ENST00000561797 MEIS3P1A6NDR6 274 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 FCGR3BO75015 233 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 TMEM127O75204 238 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 IGHV3-11P01762 117 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 CD40LGP29965 261 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 TPPP2P59282 170 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 SSBP2P81877 361 aaPredicted RBP12.15□□□□□ -0.46
VPS39-203ENST00000561797 RUNX1Q01196 453 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 ZNF616Q08AN1 781 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 FHL3Q13643 280 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 VMA21Q3ZAQ7 101 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 OR2B11Q5JQS5 317 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 HOGA1Q86XE5 327 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 OR5T1Q8NG75 326 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 S100A16Q96FQ6 103 aaKnown RBP12.15□□□□□ -0.46
VPS39-203ENST00000561797 DCUN1D5Q9BTE7 237 aa12.15□□□□□ -0.46
VPS39-203ENST00000561797 RBMX2Q9Y388 322 aaKnown RBP12.15□□□□□ -0.46
VPS39-203ENST00000561797 TRIM64CA6NLI5 447 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 SEC14L6B5MCN3 397 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 SLC22A5O76082 557 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 IGLV2-14P01704 120 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 TRGV3P03979 118 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 OR8U8P0C7N1 319 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 RPL30P62888 115 aaKnown RBP12.14□□□□□ -0.47
VPS39-203ENST00000561797 UBE2NLQ5JXB2 153 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 C9orf66Q5T8R8 295 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 ASPHD1Q5U4P2 390 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 PYHIN1Q6K0P9 492 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 IDO2Q6ZQW0 420 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 KCTD9Q7L273 389 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 SAMD12Q8N8I0 201 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 FUNDC2Q9BWH2 189 aa12.14□□□□□ -0.47
VPS39-203ENST00000561797 XRCC3O43542 346 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 LGALS1P09382 135 aaKnown RBP12.13□□□□□ -0.47
VPS39-203ENST00000561797 FCGR2CP31995 323 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 UBE2KP61086 200 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 NCS1P62166 190 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 DGCR2P98153 550 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 TNXAQ16473 311 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 MRGPRG-AS1Q2M3A8 158 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 TEX45Q8NA69 505 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 OSR1Q8TAX0 266 aaPredicted RBP12.13□□□□□ -0.47
VPS39-203ENST00000561797 DCUN1D4Q92564 292 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 GPHA2Q96T91 129 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 PHB2Q99623 299 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 PRELID3BQ9Y3B1 194 aa12.13□□□□□ -0.47
VPS39-203ENST00000561797 APELAP0DMC3 54 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 AADACP22760 399 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 CBX5P45973 191 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 SLURP1P55000 103 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 VBP1P61758 197 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 SECTM1Q8WVN6 248 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 TCTEX1D2Q8WW35 142 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 ACOT12Q8WYK0 555 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 HSD17B10Q99714 261 aaKnown RBP12.12□□□□□ -0.47
VPS39-203ENST00000561797 SLA2Q9H6Q3 261 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 IFT46Q9NQC8 304 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 CCL28Q9NRJ3 127 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 TAS2R8Q9NYW2 309 aa12.12□□□□□ -0.47
VPS39-203ENST00000561797 MRPS7Q9Y2R9 242 aaKnown RBP12.12□□□□□ -0.47
VPS39-203ENST00000561797 PRKDCP78527 4128 aaKnown RBP12.12□□□□□ -0.47
VPS39-203ENST00000561797 IGHV4OR15-8A0A075B7B6 117 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 A0A087WW49 117 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 MSGN1A6NI15 193 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 LINC01619G3V211 115 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 OVOL1O14753 267 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 SAA1P0DJI8 122 aaPredicted RBP12.11□□□□□ -0.47
VPS39-203ENST00000561797 TAS2R20P59543 309 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 FXYD4P59646 89 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 PRSS8Q16651 343 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 TMEM69Q5SWH9 247 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 MFSD4AQ8N468 514 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms