RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	H1FOO	Q8IZA3	346 aa	Predicted RBP	10.91	□□□□□ -0.66
TPM1-223	ENST00000560445	PHB2	Q99623	299 aa		10.91	□□□□□ -0.66
TPM1-223	ENST00000560445	SCOC	Q9UIL1	159 aa		10.91	□□□□□ -0.66
TPM1-223	ENST00000560445	FBXO7	Q9Y3I1	522 aa		10.91	□□□□□ -0.66
TPM1-223	ENST00000560445	ETV7	Q9Y603	341 aa		10.91	□□□□□ -0.66
TPM1-223	ENST00000560445	SHISA3	A0PJX4	238 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	FCN1	O00602	326 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	SOX15	O60248	233 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	EGR2	P11161	476 aa	Predicted RBP	10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	UBE2K	P61086	200 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	ZNF645	Q8N7E2	425 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	TEX45	Q8NA69	505 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	USMG5	Q96IX5	58 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	PRR25	Q96S07	402 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	FAM103A1	Q9BTL3	118 aa	Known RBP	10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	DAPK2	Q9UIK4	370 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445	LSM4	Q9Y4Z0	139 aa	Known RBP	10.9	□□□□□ -0.66
TPM1-223	ENST00000560445		U3KQK5	164 aa		10.9	□□□□□ -0.66
TPM1-223	ENST00000560445		A0A0A6YYH2	397 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445		A6NJ64	397 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	MPPED1	O15442	326 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	PROP1	O75360	226 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	PLA2G7	Q13093	441 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	TIMM50	Q3ZCQ8	353 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	CDNF	Q49AH0	187 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	ASPHD1	Q5U4P2	390 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	ACSM6	Q6P461	480 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	SFXN4	Q6P4A7	337 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	CNIH2	Q6PI25	160 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	BVES	Q8NE79	360 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	VSTM2A	Q8TAG5	236 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	RHOV	Q96L33	236 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	MS4A10	Q96PG2	267 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	HSD17B10	Q99714	261 aa	Known RBP	10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	SPIN2A	Q99865	258 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	SPIN2B	Q9BPZ2	258 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	AIFM2	Q9BRQ8	373 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	RRP15	Q9Y3B9	282 aa	Known RBP	10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	OR2W1	Q9Y3N9	320 aa		10.89	□□□□□ -0.67
TPM1-223	ENST00000560445	IGHV4OR15-8	A0A075B7B6	117 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445		A0A087WW49	117 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445		A0A0B4J203	849 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	CRYZL1	O95825	349 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	DUT	P33316	252 aa	Known RBP	10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	KCTD21	Q4G0X4	260 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	C11orf87	Q6NUJ2	197 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	KCTD9	Q7L273	389 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	SLC25A42	Q86VD7	318 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	ANKRD13B	Q86YJ7	626 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	CROCCP3	Q8IVE0	287 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	DLX4	Q92988	240 aa	Predicted RBP	10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	BORCS5	Q969J3	196 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	RBMXL1	Q96E39	390 aa	Known RBP	10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	ST6GALNAC5	Q9BVH7	336 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	VCX3A	Q9NNX9	186 aa		10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	ZNF230	Q9UIE0	474 aa	Predicted RBP	10.88	□□□□□ -0.67
TPM1-223	ENST00000560445	SMIM30	A4D0T7	59 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	IGLV2-23	P01705	113 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	IGHV3-11	P01762	117 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	SLURP1	P55000	103 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	ARPC4	P59998	168 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	NEDD8	Q15843	81 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	NR2C2AP	Q86WQ0	139 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	MMD2	Q8IY49	270 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	OR4S2	Q8NH73	311 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	MAFIP	Q8WZ33	124 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	DCUN1D5	Q9BTE7	237 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	TINAGL1	Q9GZM7	467 aa	Predicted RBP	10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	ALX4	Q9H161	411 aa	Predicted RBP	10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	OR51E2	Q9H255	320 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	DIABLO	Q9NR28	239 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	RHBDL2	Q9NX52	303 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	COA4	Q9NYJ1	87 aa		10.87	□□□□□ -0.67
TPM1-223	ENST00000560445	LOC100506127	A0A0U1RQW1	187 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	FAM223B	A6NKX1	122 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445		H0Y980	276 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	TUSC2	O75896	110 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	HLA-DQB1	P01920	261 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	CRYGB	P07316	175 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	OR9G9	P0C7N8	305 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	SDC2	P34741	201 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	KIR2DS2	P43631	304 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	CBX5	P45973	191 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	CDK10	Q15131	360 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	MSMO1	Q15800	293 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	TNXA	Q16473	311 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	PRSS8	Q16651	343 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	FAM223A	Q8IWN6	122 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	OR5T1	Q8NG75	326 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	ACOT12	Q8WYK0	555 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	DDB2	Q92466	427 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	TPSG1	Q9NRR2	321 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	ANXA10	Q9UJ72	324 aa		10.86	□□□□□ -0.67
TPM1-223	ENST00000560445	COL7A1	Q02388	2944 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	TENM3	Q9P273	2699 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	TMEM235	A6NFC5	223 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	DHFR	P00374	187 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	SNRPB	P14678	240 aa	Known RBP	10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	GP9	P14770	177 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	MXD1	Q05195	221 aa		10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms