RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 BEST4Q8NFU0 473 aa11.9□□□□□ -0.5
CPSF1-208ENST00000532560 NPBQ8NG41 125 aa11.9□□□□□ -0.5
CPSF1-208ENST00000532560 C5orf30Q96GV9 206 aa11.9□□□□□ -0.5
CPSF1-208ENST00000532560 HYLS1Q96M11 299 aa11.9□□□□□ -0.5
CPSF1-208ENST00000532560 RASL11BQ9BPW5 248 aa11.9□□□□□ -0.5
CPSF1-208ENST00000532560 RANGRFQ9HD47 186 aaPredicted RBP11.9□□□□□ -0.5
CPSF1-208ENST00000532560 SDHAF2Q9NX18 166 aa11.9□□□□□ -0.5
CPSF1-208ENST00000532560 GABARAPH6UMI1 98 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 M0R1X1 148 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 NBR2O15453 112 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 KCNAB3O43448 404 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 PRAF2O60831 178 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 NDUFA3O95167 84 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 CD28P10747 220 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 NKX2-5P52952 324 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-208ENST00000532560 ARPC4P59998 168 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 TREML4Q6UXN2 200 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 FOXRED2Q8IWF2 684 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 ZNF383Q8NA42 475 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 OR5AU1Q8NGC0 362 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 SNAPC3Q92966 411 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 RNF5Q99942 180 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 MED28Q9H204 178 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 ANAPC10Q9UM13 185 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 OR2W1Q9Y3N9 320 aa11.89□□□□□ -0.51
CPSF1-208ENST00000532560 RBM7Q9Y580 266 aaKnown RBP11.89□□□□□ -0.51
CPSF1-208ENST00000532560 H7C2Y5 167 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 AP4M1O00189 453 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 TUSC2O75896 110 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 HLA-DRB1P01911 266 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 APOA2P02652 100 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 NFYAP23511 347 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-208ENST00000532560 CNTFRP26992 372 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 LUMP51884 338 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-208ENST00000532560 CD83Q01151 205 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 KLF9Q13886 244 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-208ENST00000532560 CENPVQ7Z7K6 275 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-208ENST00000532560 NDUFA11Q86Y39 141 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 PDPNQ86YL7 162 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 RITA1Q96K30 269 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 IFT46Q9NQC8 304 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 KIAA1456Q9P272 454 aa11.88□□□□□ -0.51
CPSF1-208ENST00000532560 TRRAPQ9Y4A5 3859 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 PSMB11A5LHX3 300 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 SLC22A5O76082 557 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 TSPAN15O95858 294 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 TCRBP04435 133 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 CSF1P09603 554 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 BTCP35070 178 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 TAGLNQ01995 201 aaKnown RBP11.87□□□□□ -0.51
CPSF1-208ENST00000532560 C5orf64Q2M2E5 130 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 STPG2Q8N412 459 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 ZNF645Q8N7E2 425 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 OR4X2Q8NGF9 303 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 NOL4LQ96MY1 436 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-208ENST00000532560 CITED2Q99967 270 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-208ENST00000532560 HSPB9Q9BQS6 159 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 NECAP2Q9NVZ3 263 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 MCUBQ9NWR8 336 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 ZNF107Q9UII5 783 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-208ENST00000532560 ZNF580Q9UK33 172 aa11.87□□□□□ -0.51
CPSF1-208ENST00000532560 RBMX2Q9Y388 322 aaKnown RBP11.87□□□□□ -0.51
CPSF1-208ENST00000532560 MEIS3P1A6NDR6 274 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 ADARB2-AS1A8MUL3 147 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 RRHO14718 337 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 SPDEFO95238 335 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 IGKV1-16P04430 117 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 H2AFB2P0C5Z0 115 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 PRSS3P35030 304 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 THBS3P49746 956 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 LINC00205P59089 165 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 SSBP1Q04837 148 aaKnown RBP11.86□□□□□ -0.51
CPSF1-208ENST00000532560 TCTEX1D4Q5JR98 221 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 HIST2H2BDQ6DRA6 164 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 C10orf99Q6UWK7 81 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 ZNF767PQ75MW2 155 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 OR5AP2Q8NGF4 316 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 FCAMRQ8WWV6 532 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 ADTRPQ96IZ2 230 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 FYTTD1Q96QD9 318 aaKnown RBP11.86□□□□□ -0.51
CPSF1-208ENST00000532560 SCPEP1Q9HB40 452 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 SLC35D1Q9NTN3 355 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 TAS2R8Q9NYW2 309 aa11.86□□□□□ -0.51
CPSF1-208ENST00000532560 IGKV1D-13A0A0B4J2D9 117 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 LINC01548A6NM66 108 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 OPN1MWP04001 364 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 IGF1P05019 195 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 OPN1MW2P0DN77 364 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 OPN1MW3P0DN78 364 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 OR5H8P0DN80 308 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 IGKV1-13P0DP09 117 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 ANXA3P12429 323 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 NAT1P18440 290 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 DUTP33316 252 aaKnown RBP11.85□□□□□ -0.51
CPSF1-208ENST00000532560 FAUP35544 74 aaKnown RBP11.85□□□□□ -0.51
CPSF1-208ENST00000532560 SLC35B1P78383 322 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 DGCR2P98153 550 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 RTL8BQ17RB0 113 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 COMMD1Q8N668 190 aa11.85□□□□□ -0.51
CPSF1-208ENST00000532560 GPX8Q8TED1 209 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms