RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SYT4Q9H2B2 425 aa1.5□□□□□ -2.17
CD44-233ENST00000531141 NRBP2Q9NSY0 501 aa1.5□□□□□ -2.17
CD44-233ENST00000531141 DNAJC27Q9NZQ0 273 aa1.5□□□□□ -2.17
CD44-233ENST00000531141 ENPP5Q9UJA9 477 aa1.5□□□□□ -2.17
CD44-233ENST00000531141 SLC22A14Q9Y267 594 aa1.5□□□□□ -2.17
CD44-233ENST00000531141 PUS1Q9Y606 427 aaKnown RBP eCLIP1.5□□□□□ -2.17
CD44-233ENST00000531141 MYO18AQ92614 2054 aaKnown RBP1.5□□□□□ -2.17
CD44-233ENST00000531141 POLEQ07864 2286 aa1.5□□□□□ -2.17
CD44-233ENST00000531141 RP1P56715 2156 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 PCLOQ9Y6V0 5065 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 MYH4Q9Y623 1939 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 A0A0A6YYH2 397 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 C1orf232A0A0U1RR37 186 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 SLC5A10A0PJK1 596 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 A6NJ64 397 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 HLA-AP01891 365 aaKnown RBP1.49□□□□□ -2.17
CD44-233ENST00000531141 LIPCP11150 499 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 TAC1P20366 129 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 ELK4P28324 431 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 MAGOHP61326 146 aaKnown RBP1.49□□□□□ -2.17
CD44-233ENST00000531141 VSNL1P62760 191 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 SKP1P63208 163 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 SLAMF1Q13291 335 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 PDGFRLQ15198 375 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 BCL2A1Q16548 175 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 PLEKHG7Q6ZR37 379 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 PLCZ1Q86YW0 608 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 GAPTQ8N292 157 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 ZNF565Q8N9K5 539 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 Q8NDZ9 215 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 OR6K2Q8NGY2 324 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 GTF2H4Q92759 462 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 CDKL2Q92772 493 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 APOBEC3DQ96AK3 386 aaPredicted RBP1.49□□□□□ -2.17
CD44-233ENST00000531141 C20orf166-AS1Q96NR2 134 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 BBS2Q9BXC9 721 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 MAP1LC3CQ9BXW4 147 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 PRRG3Q9BZD7 231 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 NSRP1Q9H0G5 558 aaKnown RBP1.49□□□□□ -2.17
CD44-233ENST00000531141 GABARAPL1Q9H0R8 117 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 LRRC19Q9H756 370 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 PSTPIP2Q9H939 334 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 EURLQ9NYK6 297 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 STMN3Q9NZ72 180 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 ZNF706Q9Y5V0 76 aaPredicted RBP1.49□□□□□ -2.17
CD44-233ENST00000531141 MYO5AQ9Y4I1 1855 aaKnown RBP1.49□□□□□ -2.17
CD44-233ENST00000531141 RYR2Q92736 4967 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 ZGRF1Q86YA3 2104 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 CNTRLQ7Z7A1 2325 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 UBR4Q5T4S7 5183 aa1.49□□□□□ -2.17
CD44-233ENST00000531141 PLXND1Q9Y4D7 1925 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 TMEM131Q92545 1883 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 NUMA1Q14980 2115 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 ZNF532Q9HCE3 1301 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 AKAP6Q13023 2319 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 ARL5CA6NH57 179 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 A8MWP4 228 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 F8VP50 259 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 F8VZ95 297 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 H3BMM0 161 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 MKRN2OSH3BPM6 223 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 GOLGA8RI6L899 631 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 TOR1AO14656 332 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 SHOX2O60902 331 aaPredicted RBP1.48□□□□□ -2.17
CD44-233ENST00000531141 IGKV1D-33P01593 117 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 IGKV1-33P01594 117 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 GP1BAP07359 652 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 SCGB1C2P0DMR2 95 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 HTR2CP28335 458 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 CD40LGP29965 261 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 HAAOP46952 286 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 EMP2P54851 167 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 ARPP19P56211 112 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 DEFA6Q01524 100 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 PMS2P3Q13401 168 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 OR4D1Q15615 310 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 CEACAM16Q2WEN9 425 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 SSX6Q7RTT6 188 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 GALNT10Q86SR1 603 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 KRT222Q8N1A0 295 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 Q8NAQ8 132 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 SCGB1C1Q8TD33 95 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 RAD51AP1Q96B01 352 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 UBE2WQ96B02 151 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 ZNF514Q96K75 400 aaPredicted RBP1.48□□□□□ -2.17
CD44-233ENST00000531141 ZNF251Q9BRH9 671 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 CCDC94Q9BW85 323 aaPredicted RBP1.48□□□□□ -2.17
CD44-233ENST00000531141 CHID1Q9BWS9 393 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 METTL8Q9H825 291 aaKnown RBP1.48□□□□□ -2.17
CD44-233ENST00000531141 PLEKHA1Q9HB21 404 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 ANKHQ9HCJ1 492 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 MS4A12Q9NXJ0 267 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 VAPAQ9P0L0 249 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 NAGKQ9UJ70 344 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 U3KQK5 164 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 V9GYY9 64 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 TENM1Q9UKZ4 2725 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 SVEP1Q4LDE5 3571 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 MYO7BQ6PIF6 2116 aa1.48□□□□□ -2.17
CD44-233ENST00000531141 A0A1B0GW15 77 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms