RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 GSTZ1O43708 216 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 SLC25A17O43808 307 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 IGLV2-14P01704 120 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 AKAIN1P0CW23 69 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 PPP5CP53041 499 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 RPL30P62888 115 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 MEF2DQ14814 521 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 C5orf64Q2M2E5 130 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 PHLDA2Q53GA4 152 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 LIN54Q6MZP7 749 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 FAAP20Q6NZ36 180 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 ZNF66Q6ZN08 573 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 CMTM1Q8IZ96 169 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 Q8N402 240 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 MFSD4AQ8N468 514 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 FAM71E2Q8N5Q1 922 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 ZBTB34Q8NCN2 500 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 NPBQ8NG41 125 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 OR4D10Q8NGI6 311 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 NOL4LQ96MY1 436 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 RNF5Q99942 180 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 THAP7Q9BT49 309 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 GPR31O00270 319 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 FBXO24O75426 580 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 KIR2DS2P43631 304 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 INPP1P49441 399 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 GNB1P62873 340 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 PSG5Q15238 335 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 VMA21Q3ZAQ7 101 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 KHDC1LQ5JSQ8 128 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 ZNF660Q6AZW8 331 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 LPCAT3Q6P1A2 487 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 CCDC190Q86UF4 302 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 POC5Q8NA72 575 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 OR4S2Q8NH73 311 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 DDB2Q92466 427 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 HSPB9Q9BQS6 159 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 PARP11Q9NR21 331 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 MCUBQ9NWR8 336 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 V9GYH0 126 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 PSMB11A5LHX3 300 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 A6NHS1 94 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 LINC01548A6NM66 108 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 AP4M1O00189 453 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 NDUFA3O95167 84 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 SPDEFO95238 335 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 IGHG2P01859 326 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 CD74P04233 296 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 RLN1P04808 185 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 GNRHRP30968 328 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 LGALS7P47929 136 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 KRTAP10-3P60369 221 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 MSMO1Q15800 293 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 CNPY1Q3B7I2 92 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 TMEM177Q53S58 311 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 HIST2H2BDQ6DRA6 164 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 SLC38A6Q8IZM9 456 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 SPAG16Q8N0X2 631 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 ARRDC1Q8N5I2 433 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 OR5AU1Q8NGC0 362 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 CHPT1Q8WUD6 406 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 SOSTQ9BQB4 213 aa9.04□□□□□ -0.96
LIMCH1-210ENST00000509454 CNIH1O95406 144 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 HLA-DRB1P01911 266 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 CD28P10747 220 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 VDAC1P21796 283 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 PTBP1P26599 531 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 AP3S2P59780 193 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 SLC35B1P78383 322 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 ZNF57Q68EA5 555 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 ZNF329Q86UD4 541 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 TOMM5Q8N4H5 51 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 OR4X2Q8NGF9 303 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 OR4C16Q8NGL9 310 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 OSR1Q8TAX0 266 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 OR51J1Q9H342 316 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 BATF3Q9NR55 127 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 TPSG1Q9NRR2 321 aa9.03□□□□□ -0.96
LIMCH1-210ENST00000509454 A0A1W2PRX2 142 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 ANKRD20A5PA0PJZ0 165 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 FCN1O00602 326 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 PGLYRP1O75594 196 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 CA2P00918 260 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 PI3P19957 117 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 FAUP35544 74 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 EIF4EBP1Q13541 118 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 ZNF79Q15937 498 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 ECSCRQ19T08 205 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 NSUN5P1Q3KNT7 163 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 TRIQKQ629K1 86 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 IDO2Q6ZQW0 420 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 SSX9Q7RTT3 188 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 VKORC1L1Q8N0U8 176 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 STPG2Q8N412 459 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 TERB2Q8NHR7 220 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 GRPEL2Q8TAA5 225 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 CITED1Q99966 193 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 RSRP1Q9BUV0 290 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 GON7Q9BXV9 100 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 WNT10AQ9GZT5 417 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 180.9 ms