RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SELENOFO60613 162 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 WBP4O75554 376 aaKnown RBP2.95□□□□□ -1.94
USP54-217ENST00000498213 CDK2AP2O75956 126 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 SOX14O95416 240 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 DIRAS3O95661 229 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 IGKV1D-33P01593 117 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 IGKV1-33P01594 117 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 CLEC3BP05452 202 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 HTR1AP08908 422 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 PIPP12273 146 aaPredicted RBP2.95□□□□□ -1.94
USP54-217ENST00000498213 ZNF44P15621 663 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 GABRB1P18505 474 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 ANXA7P20073 488 aaKnown RBP2.95□□□□□ -1.94
USP54-217ENST00000498213 AADACP22760 399 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 ATP6V1E1P36543 226 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 HSPA13P48723 471 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 TCTAP57738 103 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 GMFBP60983 142 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 RAB40BQ12829 278 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 UBE2V1Q13404 147 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 MED21Q13503 144 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 EDDM3AQ14507 147 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 MED22Q15528 200 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 UBE2V2Q15819 145 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 C17orf58Q2M2W7 97 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 AKIRIN2Q53H80 203 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 C6orf183Q5T699 404 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 ZNF691Q5VV52 312 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 TMEM236Q5W0B7 351 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 OTPQ5XKR4 325 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 GLDNQ6ZMI3 551 aaPredicted RBP2.95□□□□□ -1.94
USP54-217ENST00000498213 KRTAP7-1Q8IUC3 87 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 SLC35F2Q8IXU6 374 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 GAPTQ8N292 157 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 STX19Q8N4C7 294 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 DHRSXQ8N5I4 330 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 YIPF7Q8N8F6 280 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 Q8N9W7 124 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 MINDY2Q8NBR6 621 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 TMEM104Q8NE00 496 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 NPBQ8NG41 125 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 OR51A2Q8NGJ7 313 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 OR1N2Q8NGR9 330 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 OR56B4Q8NH76 319 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 CNIH3Q8TBE1 160 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 ST6GALNAC6Q969X2 333 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 RDH12Q96NR8 316 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 OR4C12Q96R67 309 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 IL4I1Q96RQ9 567 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 S1PR3Q99500 378 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 VCXQ9H320 206 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 ZNF286AQ9HBT8 521 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 C8orf4Q9NR00 106 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 GPR173Q9NS66 373 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 CALYQ9NYX4 217 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 RCC2Q9P258 522 aaKnown RBP2.95□□□□□ -1.94
USP54-217ENST00000498213 GHRLQ9UBU3 117 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 JPT1Q9UK76 154 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 MGAT4AQ9UM21 535 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 STUB1Q9UNE7 303 aa2.95□□□□□ -1.94
USP54-217ENST00000498213 MEIKINA0A087WXM9 373 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 LOC100130705A0A1B0GUX0 176 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 LOC107986453A0A1B0GWG9 222 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 IRGMA1A4Y4 181 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 CCDC182A6NF36 153 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 OR5H14A6NHG9 310 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 NCBP2LA6PVI3 153 aaKnown RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 EPM2AB3EWF7 344 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 LINC01619G3V211 115 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 SULT1B1O43704 296 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 CREBL2O60519 120 aaPredicted RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 GPX5O75715 221 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 NDUFA3O95167 84 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 HSPB1P04792 205 aaKnown RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 LGALS1P09382 135 aaKnown RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 GTF2F2P13984 249 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 GP9P14770 177 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 PRKACAP17612 351 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 RAB3AP20336 220 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 CALRP27797 417 aaKnown RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 RAB9AP51151 201 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 HTD2P86397 168 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 PITPNAQ00169 270 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 HES1Q14469 280 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 TMEM187Q14656 261 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 KISS1Q15726 138 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 PAN3Q58A45 887 aaKnown RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 KIAA2026Q5HYC2 2103 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 RSBN1Q5VWQ0 802 aaPredicted RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 RNLSQ5VYX0 342 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 C12orf73Q69YU5 71 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 LGALS9CQ6DKI2 356 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 LCN12Q6JVE5 192 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 Q6P435 159 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 SLC25A48Q6ZT89 311 aaKnown RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 NOTCH2NLQ7Z3S9 236 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 GTSCR1Q86UQ5 136 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 Q8N402 240 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 ZNF491Q8N8L2 437 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 OR11H1Q8NG94 326 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms