RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TAS2R20P59543 309 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 KRTAP10-11P60412 298 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 EIF4EBP1Q13541 118 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-214ENST00000490398 CTF1Q16619 201 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 OR2B11Q5JQS5 317 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 ZNF562Q6V9R5 426 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 PPP1R27Q86WC6 154 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 LFNGQ8NES3 379 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 S100A16Q96FQ6 103 aaKnown RBP14.1□□□□□ -0.15
COL9A3-214ENST00000490398 AURKAIP1Q9NWT8 199 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-214ENST00000490398 COMMD3Q9UBI1 195 aa14.1□□□□□ -0.15
COL9A3-214ENST00000490398 RBMX2Q9Y388 322 aaKnown RBP14.1□□□□□ -0.15
COL9A3-214ENST00000490398 SHOXO15266 292 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 CRYZL1O95825 349 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 HOXD3P31249 432 aaPredicted RBP14.09□□□□□ -0.15
COL9A3-214ENST00000490398 FCGR2CP31995 323 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 RAB9AP51151 201 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 BRWD1-AS2P59051 145 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 ARPC4P59998 168 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 GNB1P62873 340 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 ASPHD1Q5U4P2 390 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 ANKRD13BQ86YJ7 626 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 GRPEL2Q8TAA5 225 aa14.09□□□□□ -0.15
COL9A3-214ENST00000490398 ALX4Q9H161 411 aaPredicted RBP14.09□□□□□ -0.15
COL9A3-214ENST00000490398 GABARAPO95166 117 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 SLC6A1P30531 599 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 ALDH3B2P48448 385 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 RAB25P57735 213 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 FXYD3Q14802 87 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 TMEM69Q5SWH9 247 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 GPR107Q5VW38 600 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 UNQ5815/PRO19632Q6UWF5 114 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 IDO2Q6ZQW0 420 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 C4orf3Q8WVX3 66 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 ARPC1AQ92747 370 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 RCC1LQ96I51 464 aaKnown RBP14.08□□□□□ -0.16
COL9A3-214ENST00000490398 CCL28Q9NRJ3 127 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 NECAP2Q9NVZ3 263 aa14.08□□□□□ -0.16
COL9A3-214ENST00000490398 FOXA2Q9Y261 457 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-214ENST00000490398 I3L521 148 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 FCGR3BO75015 233 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 LGALS7P47929 136 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 RTL8BQ17RB0 113 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 TMEM65Q6PI78 240 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 ADTRPQ96IZ2 230 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 UBE2E2Q96LR5 201 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 MS4A10Q96PG2 267 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 ANAPC10Q9UM13 185 aa14.07□□□□□ -0.16
COL9A3-214ENST00000490398 HUWE1Q7Z6Z7 4374 aaKnown RBP14.06□□□□□ -0.16
COL9A3-214ENST00000490398 TNFSF12O43508 249 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 HPGDSO60760 199 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 ELK1P19419 428 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 TAGLNQ01995 201 aaKnown RBP14.06□□□□□ -0.16
COL9A3-214ENST00000490398 FHL3Q13643 280 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 AKIRIN2Q53H80 203 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 ACTBL2Q562R1 376 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 KCTD9Q7L273 389 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 OR11H1Q8NG94 326 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 SECTM1Q8WVN6 248 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 KCTD12Q96CX2 325 aaKnown RBP14.06□□□□□ -0.16
COL9A3-214ENST00000490398 MRPS26Q9BYN8 205 aaKnown RBP14.06□□□□□ -0.16
COL9A3-214ENST00000490398 TAS2R8Q9NYW2 309 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 VSIG4Q9Y279 399 aa14.06□□□□□ -0.16
COL9A3-214ENST00000490398 PPYP01298 95 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 APELAP0DMC3 54 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 RRASP10301 218 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 FXYD4P59646 89 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 UBE2KP61086 200 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 DEFA5Q01523 94 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 CDK10Q15131 360 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 OVCH2Q7RTZ1 564 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 VKORC1L1Q8N0U8 176 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 MFSD4AQ8N468 514 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 OR5T1Q8NG75 326 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 OR5AP2Q8NGF4 316 aa14.05□□□□□ -0.16
COL9A3-214ENST00000490398 CNIH1O95406 144 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 IGHV3-11P01762 117 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 PMP2P02689 132 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 SAA1P0DJI8 122 aaPredicted RBP14.04□□□□□ -0.16
COL9A3-214ENST00000490398 CBX5P45973 191 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 RFX2P48378 723 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 TMEM267Q0VDI3 215 aaPredicted RBP14.04□□□□□ -0.16
COL9A3-214ENST00000490398 CBX3Q13185 183 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 PRSS8Q16651 343 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 LYSMD2Q8IV50 215 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 TCTEX1D1Q8N7M0 179 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 OR1N2Q8NGR9 330 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 TCTEX1D2Q8WW35 142 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 IFT46Q9NQC8 304 aa14.04□□□□□ -0.16
COL9A3-214ENST00000490398 MRPS7Q9Y2R9 242 aaKnown RBP14.04□□□□□ -0.16
COL9A3-214ENST00000490398 WI2-2373I1.2A0A1W2PRP0 233 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 APOA1P02647 267 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 NAT1P18440 290 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 PRSS3P35030 304 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 RORCP51449 518 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 RUNX1Q01196 453 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 SPCS2Q15005 226 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 C10orf55Q5SWW7 151 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 SNX29P2Q8IUI4 249 aa14.03□□□□□ -0.16
COL9A3-214ENST00000490398 TEX45Q8NA69 505 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms