RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 WDR31Q8NA23 367 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 CCDC54Q8NEL0 328 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 NDNFQ8TB73 568 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 RGP1Q92546 391 aaPredicted RBP2.89□□□□□ -1.95
PTCD3-216ENST00000487043 DCUN1D4Q92564 292 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 SGK3Q96BR1 496 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF799Q96GE5 643 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF75AQ96N20 296 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 DERL3Q96Q80 235 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 DCUN1D5Q9BTE7 237 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 MED18Q9BUE0 208 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 PBOV1Q9GZY1 135 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 DCSTAMPQ9H295 470 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 HMG20AQ9NP66 347 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 DIABLOQ9NR28 239 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 NUFIP1Q9UHK0 495 aaKnown RBP2.89□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF391Q9UJN7 358 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 HHLA2Q9UM44 414 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 SLC22A13Q9Y226 551 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 MMP24Q9Y5R2 645 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 CACNA1CQ13936 2221 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 ZGRF1Q86YA3 2104 aa2.89□□□□□ -1.95
PTCD3-216ENST00000487043 A0A1B0GTI1 187 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 A0A1B0GVI7 797 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ISPDA4D126 451 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 C5orf49A4QMS7 147 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 OR5H1A6NKK0 313 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CLDN25C9JDP6 229 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SIRPB1O00241 398 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 PDCD5O14737 125 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 XRCC2O43543 280 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 EIF3GO75821 320 aaKnown RBP eCLIP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 MMP23AO75900 390 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 LYZL6O75951 148 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 IGKV3-15P01624 115 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ALDOBP05062 364 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CD2P06729 351 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 GIPP09681 153 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CD37P11049 281 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SLC2A1P11166 492 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CD79AP11912 226 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF14P17017 642 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 IGFBP3P17936 291 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 RAB3BP20337 219 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 M6PRP20645 277 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CCL1P22362 96 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CFL1P23528 166 aaKnown RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 MYL9P24844 172 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 GPR6P46095 362 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SUB1P53999 127 aaKnown RBP eCLIP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 RIPPLY3P57055 190 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 UBE2NP61088 152 aaKnown RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 MXD1Q05195 221 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 TSC22D1Q15714 1073 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 TBC1D28Q2M2D7 210 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF404Q494X3 552 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 HSD17B12Q53GQ0 312 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 TIMM23BQ5SRD1 257 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 FAM27D1Q5T7N8 215 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 BCL2L15Q5TBC7 163 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 LCN12Q6JVE5 192 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 BHLHA15Q7RTS1 189 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SSX8Q7RTT4 187 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 MDP1Q86V88 176 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF584Q8IVC4 421 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CMTM1Q8IZ96 169 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 TMEM61Q8N0U2 210 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 PNKDQ8N490 385 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 HSD17B11Q8NBQ5 300 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 OR8B12Q8NGG6 310 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 OR51A4Q8NGJ6 313 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 OR5D14Q8NGL3 314 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 OR10AC1Q8NH08 325 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ANGPTL6Q8NI99 470 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF502Q8TBZ5 544 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 OR51E1Q8TCB6 317 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 MARCH1Q8TCQ1 289 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CAPSLQ8WWF8 208 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SLC7A6Q92536 515 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 TMEM106AQ96A25 262 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SLC25A46Q96AG3 418 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 APOBEC3DQ96AK3 386 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 KCNS3Q9BQ31 491 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 PYGO2Q9BRQ0 406 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SLIRPQ9GZT3 109 aaKnown RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 NXF2Q9GZY0 626 aaKnown RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 DNTTIP1Q9H147 329 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 TPK1Q9H3S4 243 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 RGCCQ9H4X1 137 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 RANBP3Q9H6Z4 567 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 NOX3Q9HBY0 568 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 GPR84Q9NQS5 396 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 TNFRSF19Q9NS68 423 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 CCDC59Q9P031 241 aaKnown RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ZNF256Q9Y2P7 627 aaPredicted RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SLC25A15Q9Y619 301 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 ATRXP46100 2492 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 INTS1Q8N201 2190 aaKnown RBP2.88□□□□□ -1.95
PTCD3-216ENST00000487043 SHANK1Q9Y566 2161 aa2.88□□□□□ -1.95
PTCD3-216ENST00000487043 BOD1L1Q8NFC6 3051 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms