RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 TMEM177Q53S58 311 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 PYHIN1Q6K0P9 492 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 OVCH2Q7RTZ1 564 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 ZNF429Q86V71 674 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 NUDCD2Q8WVJ2 157 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 GINS4Q9BRT9 223 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 ST6GALNAC5Q9BVH7 336 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 DAPK2Q9UIK4 370 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 STUB1Q9UNE7 303 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 RBM7Q9Y580 266 aaKnown RBP12.8□□□□□ -0.36
USP40-212ENST00000473191 ANKRD34BA5PLL1 514 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 METTL21EPA6NDL7 271 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 TRIM64CA6NLI5 447 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 NOTOA8MTQ0 251 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 SSX5O60225 188 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 GP9P14770 177 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 FGF9P31371 208 aaPredicted RBP12.79□□□□□ -0.36
USP40-212ENST00000473191 TALDO1P37837 337 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 RPL30P62888 115 aaKnown RBP12.79□□□□□ -0.36
USP40-212ENST00000473191 TAGLNQ01995 201 aaKnown RBP12.79□□□□□ -0.36
USP40-212ENST00000473191 Q6ZS49 121 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 SBSPONQ8IVN8 264 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 POC5Q8NA72 575 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 OR5H6Q8NGV6 325 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 LGALS14Q8TCE9 139 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 SLA2Q9H6Q3 261 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.79□□□□□ -0.36
USP40-212ENST00000473191 U3KQK5 164 aa12.79□□□□□ -0.36
USP40-212ENST00000473191 IGKV1D-13A0A0B4J2D9 117 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 MRPS14O60783 128 aaKnown RBP12.78□□□□□ -0.36
USP40-212ENST00000473191 CRYZL1O95825 349 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 IGKV1-13P0DP09 117 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 PTHLHP12272 177 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 SDC2P34741 201 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 LGALS7P47929 136 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 MXD1Q05195 221 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 DCTN2Q13561 401 aaKnown RBP12.78□□□□□ -0.36
USP40-212ENST00000473191 SRSF7Q16629 238 aaKnown RBP eCLIP12.78□□□□□ -0.36
USP40-212ENST00000473191 OR2B11Q5JQS5 317 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 HACD4Q5VWC8 232 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 GPHA2Q96T91 129 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 SMAD5-AS1Q9Y6J3 95 aa12.78□□□□□ -0.36
USP40-212ENST00000473191 MSGN1A6NI15 193 aa12.77□□□□□ -0.37
USP40-212ENST00000473191 DIRAS3O95661 229 aa12.77□□□□□ -0.37
USP40-212ENST00000473191 PRH1P02810 166 aa12.77□□□□□ -0.37
USP40-212ENST00000473191 DTYMKP23919 212 aa12.77□□□□□ -0.37
USP40-212ENST00000473191 DYRK1AQ13627 763 aa12.77□□□□□ -0.37
USP40-212ENST00000473191 C10orf55Q5SWW7 151 aa12.77□□□□□ -0.37
USP40-212ENST00000473191 SFXN4Q6P4A7 337 aa12.77□□□□□ -0.37
USP40-212ENST00000473191 FCER2P06734 321 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 NHLRC4P0CG21 123 aaPredicted RBP12.76□□□□□ -0.37
USP40-212ENST00000473191 SAA1P0DJI8 122 aaPredicted RBP12.76□□□□□ -0.37
USP40-212ENST00000473191 TGFBR1P36897 503 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 RANBP1P43487 201 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 BRWD1-AS2P59051 145 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 PITPNAQ00169 270 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 TNXAQ16473 311 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 RTL8BQ17RB0 113 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 VKORC1L1Q8N0U8 176 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 SLC25A38Q96DW6 304 aa12.76□□□□□ -0.37
USP40-212ENST00000473191 C13orf42A0A1B0GVH6 325 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 FCGR3BO75015 233 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 TUSC2O75896 110 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 CD40LGP29965 261 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 UBE2KP61086 200 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 EIF4EBP1Q13541 118 aaPredicted RBP12.75□□□□□ -0.37
USP40-212ENST00000473191 PRSS8Q16651 343 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 ZNF773Q6PK81 442 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 IL34Q6ZMJ4 242 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 C19orf35Q6ZS72 473 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 ZNF645Q8N7E2 425 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 GVQW1Q8N7I0 195 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 SRSF12Q8WXF0 261 aaKnown RBP12.75□□□□□ -0.37
USP40-212ENST00000473191 PHB2Q99623 299 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 CENPOQ9BU64 300 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 RSRP1Q9BUV0 290 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 TINAGL1Q9GZM7 467 aaPredicted RBP12.75□□□□□ -0.37
USP40-212ENST00000473191 ZNF430Q9H8G1 570 aaPredicted RBP12.75□□□□□ -0.37
USP40-212ENST00000473191 COA4Q9NYJ1 87 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 SSR3Q9UNL2 185 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 OR2W1Q9Y3N9 320 aa12.75□□□□□ -0.37
USP40-212ENST00000473191 H3BUA1 57 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 HLA-DQB1P01920 261 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 FRMD6-AS1P0C7T7 363 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 ZNF45Q02386 682 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 KLF5Q13887 457 aaPredicted RBP12.74□□□□□ -0.37
USP40-212ENST00000473191 NEDD8Q15843 81 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 TPRA1Q86W33 373 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 TEX45Q8NA69 505 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 ADAD2Q8NCV1 583 aaKnown RBP12.74□□□□□ -0.37
USP40-212ENST00000473191 OR6Q1Q8NGQ2 317 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 ACOT12Q8WYK0 555 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 FCGR1BQ92637 280 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 OR4C12Q96R67 309 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 RANGRFQ9HD47 186 aaPredicted RBP12.74□□□□□ -0.37
USP40-212ENST00000473191 RHBDL2Q9NX52 303 aa12.74□□□□□ -0.37
USP40-212ENST00000473191 RBMX2Q9Y388 322 aaKnown RBP12.74□□□□□ -0.37
USP40-212ENST00000473191 LOC100506127A0A0U1RQW1 187 aa12.73□□□□□ -0.37
USP40-212ENST00000473191 E7EUB6 86 aa12.73□□□□□ -0.37
USP40-212ENST00000473191 IGLV1-51P01701 117 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms