RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TRGV3P03979 118 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 LGALS7P47929 136 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 INSL3P51460 131 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 MXD1Q05195 221 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 SRSF7Q16629 238 aaKnown RBP eCLIP12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 SFXN4Q6P4A7 337 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 Q6ZS49 121 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 TPRA1Q86W33 373 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 OR5T1Q8NG75 326 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 NUDCD2Q8WVJ2 157 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 ZNF256Q9Y2P7 627 aaPredicted RBP12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 U3KQK5 164 aa12.14□□□□□ -0.47
CCDC88B-205ENST00000472524 SAP30O75446 220 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 CRYGBP07316 175 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 CLEC2LP0C7M8 214 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 NHLRC4P0CG21 123 aaPredicted RBP12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 SDC2P34741 201 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 GNG2P59768 71 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 SSBP2P81877 361 aaPredicted RBP12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 TAGLNQ01995 201 aaKnown RBP12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 TMEM177Q53S58 311 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 HACD4Q5VWC8 232 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 CENPOQ9BU64 300 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 SLA2Q9H6Q3 261 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 RNF167Q9H6Y7 350 aa12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 LSM4Q9Y4Z0 139 aaKnown RBP12.13□□□□□ -0.47
CCDC88B-205ENST00000472524 LOC100506127A0A0U1RQW1 187 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 SRRM4A7MD48 611 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 LINC00473A8K010 186 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 CRYZL1O95825 349 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 RRASP10301 218 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 DUTP33316 252 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 NEDD8Q15843 81 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 ZNF429Q86V71 674 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 POC5Q8NA72 575 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 ADTRPQ96IZ2 230 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 RHOVQ96L33 236 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 RHBDL2Q9NX52 303 aa12.12□□□□□ -0.47
CCDC88B-205ENST00000472524 SCGNO76038 276 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 HSPB1P04792 205 aaKnown RBP12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 APELAP0DMC3 54 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 NFYAP23511 347 aaPredicted RBP12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 PITPNAQ00169 270 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 DEFA5Q01523 94 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 VMA21Q3ZAQ7 101 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 IDO2Q6ZQW0 420 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 ZNF645Q8N7E2 425 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 DDB2Q92466 427 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 PHB2Q99623 299 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 ASCL2Q99929 193 aa12.11□□□□□ -0.47
CCDC88B-205ENST00000472524 C13orf42A0A1B0GVH6 325 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 H3BUA1 57 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 SSX5O60225 188 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 TUSC2O75896 110 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 CTXN2P0C2S0 81 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 CD36P16671 472 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 TNXAQ16473 311 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 OR2B11Q5JQS5 317 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 IDNKQ5T6J7 187 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 OR5H6Q8NGV6 325 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 DCUN1D5Q9BTE7 237 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 DCSTAMPQ9H295 470 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 COA4Q9NYJ1 87 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 OR2W1Q9Y3N9 320 aa12.1□□□□□ -0.47
CCDC88B-205ENST00000472524 HUWE1Q7Z6Z7 4374 aaKnown RBP12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 ANKRD34BA5PLL1 514 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 FCGR3BO75015 233 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 SPNP16150 400 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 UBE2KP61086 200 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 MRGPRG-AS1Q2M3A8 158 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 ACSM6Q6P461 480 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 CNIH2Q6PI25 160 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 KCTD9Q7L273 389 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 ACOT12Q8WYK0 555 aa12.09□□□□□ -0.47
CCDC88B-205ENST00000472524 TRAV18A0A075B6X5 111 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 IGKV1D-13A0A0B4J2D9 117 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 A0A0G2JLM5 398 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 MPPED1O15442 326 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 HLA-DQB1P01920 261 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 SAA1P0DJI8 122 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 IGKV1-13P0DP09 117 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 PRSS8Q16651 343 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 HAPLN4Q86UW8 402 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 TEX45Q8NA69 505 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 OR6Q1Q8NGQ2 317 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 OSR1Q8TAX0 266 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 SLC25A38Q96DW6 304 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 TMEM68Q96MH6 324 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 OR4C12Q96R67 309 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 TINAGL1Q9GZM7 467 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 ANXA10Q9UJ72 324 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 RBMX2Q9Y388 322 aaKnown RBP12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 PRELID3BQ9Y3B1 194 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 ETV7Q9Y603 341 aa12.08□□□□□ -0.48
CCDC88B-205ENST00000472524 MSGN1A6NI15 193 aa12.07□□□□□ -0.48
CCDC88B-205ENST00000472524 ARPC4P59998 168 aa12.07□□□□□ -0.48
CCDC88B-205ENST00000472524 RPL30P62888 115 aaKnown RBP12.07□□□□□ -0.48
CCDC88B-205ENST00000472524 KCTD21Q4G0X4 260 aa12.07□□□□□ -0.48
CCDC88B-205ENST00000472524 TCTEX1D2Q8WW35 142 aa12.07□□□□□ -0.48
CCDC88B-205ENST00000472524 SRSF12Q8WXF0 261 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms