RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZNF735P0CB33 412 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 AKAIN1P0CW23 69 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 VDAC2P45880 294 aaPredicted RBP9.47□□□□□ -0.89
VPS13D-204ENST00000469054 LGALS7P47929 136 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 C5orf64Q2M2E5 130 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 TMEM95Q3KNT9 176 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 TMEM177Q53S58 311 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 AADACL3Q5VUY0 350 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 LPCAT3Q6P1A2 487 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 LHFPL1Q86WI0 220 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 TCTEX1D2Q8WW35 142 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 WFDC12Q8WWY7 111 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 GPHA2Q96T91 129 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 ZNF747Q9BV97 191 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 SRRQ9GZT4 340 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 SRRM4A7MD48 611 aaKnown RBP9.46□□□□□ -0.9
VPS13D-204ENST00000469054 DISC1C4P0D8 188 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 GPR31O00270 319 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 SHOXO15266 292 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 PGLYRP1O75594 196 aaPredicted RBP9.46□□□□□ -0.9
VPS13D-204ENST00000469054 SPDEFO95238 335 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 CRYZL1O95825 349 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 IGHG2P01859 326 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 BRWD1-AS2P59051 145 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 ZNF45Q02386 682 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 CATR1Q13166 79 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 PSG5Q15238 335 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 LIN54Q6MZP7 749 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 FAAP20Q6NZ36 180 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 LINC00299Q6ZSB3 139 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 SLC35E3Q7Z769 313 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 CMTM1Q8IZ96 169 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 GDPD1Q8N9F7 314 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 OR4C16Q8NGL9 310 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 TERB2Q8NHR7 220 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 TRIM63Q969Q1 353 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 HARBI1Q96MB7 349 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 WNT10AQ9GZT5 417 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 FBXL15Q9H469 300 aa9.46□□□□□ -0.9
VPS13D-204ENST00000469054 METTL1Q9UBP6 276 aaKnown RBP9.46□□□□□ -0.9
VPS13D-204ENST00000469054 IGLV2-23P01705 113 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 HLA-DRB1P01911 266 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 VSIG10L2P0DP72 767 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 KIR2DS2P43631 304 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 AP3S2P59780 193 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 KRTAP10-3P60369 221 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 KLF9Q13886 244 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-204ENST00000469054 PLGLAQ15195 96 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 SCGB2B2Q4G0G5 96 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 OR2B11Q5JQS5 317 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 SLC38A6Q8IZM9 456 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 TOMM5Q8N4H5 51 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 KLHDC1Q8N7A1 406 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 OR51H1Q8NH63 302 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 OR4S2Q8NH73 311 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 OSR1Q8TAX0 266 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-204ENST00000469054 RSRP1Q9BUV0 290 aa9.45□□□□□ -0.9
VPS13D-204ENST00000469054 IGHV7-81A0A0B4J1V7 117 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 LINC01548A6NM66 108 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 FCN1O00602 326 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 RBFOX2O43251 390 aaKnown RBP eCLIP9.44□□□□□ -0.9
VPS13D-204ENST00000469054 KCNAB3O43448 404 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 SLC25A17O43808 307 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 CRYGBP07316 175 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 PGAM2P15259 253 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 S100GP29377 79 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 ECI1P42126 302 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 BAK1Q16611 211 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 PHLDA2Q53GA4 152 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 SHISA2Q6UWI4 295 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 CENPVQ7Z7K6 275 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-204ENST00000469054 FOXRED2Q8IWF2 684 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 SPAG16Q8N0X2 631 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 POC5Q8NA72 575 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 CD300LFQ8TDQ1 290 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 DEDD2Q8WXF8 326 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 SDHCQ99643 169 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-204ENST00000469054 PRRT1Q99946 306 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 HSPB9Q9BQS6 159 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 MCUBQ9NWR8 336 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 SLC2A8Q9NY64 477 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 PTTG2Q9NZH5 202 aa9.44□□□□□ -0.9
VPS13D-204ENST00000469054 AP4M1O00189 453 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 RAMP3O60896 148 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 RLN1P04808 185 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 FAUP35544 74 aaKnown RBP9.43□□□□□ -0.9
VPS13D-204ENST00000469054 PPP5CP53041 499 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 UBE2KP61086 200 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 SRSF4Q08170 494 aaKnown RBP9.43□□□□□ -0.9
VPS13D-204ENST00000469054 VMA21Q3ZAQ7 101 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 IDO2Q6ZQW0 420 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 STPG2Q8N412 459 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 TEX45Q8NA69 505 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 OR51S1Q8NGJ8 323 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 ZFAND1Q8TCF1 268 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 WIPF2Q8TF74 440 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-204ENST00000469054 MRGPRFQ96AM1 343 aa9.43□□□□□ -0.9
VPS13D-204ENST00000469054 ZNF486Q96H40 463 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-204ENST00000469054 NOL4LQ96MY1 436 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-204ENST00000469054 CLCC1Q96S66 551 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms