RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 UNQ5815/PRO19632Q6UWF5 114 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 KCTD9Q7L273 389 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 C4orf3Q8WVX3 66 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 ARPC1AQ92747 370 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 RAX2Q96IS3 184 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 UBE2E2Q96LR5 201 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 CMTM3Q96MX0 182 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 DUX3Q96PT4 197 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 P2RX4Q99571 388 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 FAM103A1Q9BTL3 118 aaKnown RBP11.86□□□□□ -0.51
LIMS3-201ENST00000437679 GPR61Q9BZJ8 451 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 KLK15Q9H2R5 256 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 TPSG1Q9NRR2 321 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 MRPS7Q9Y2R9 242 aaKnown RBP11.86□□□□□ -0.51
LIMS3-201ENST00000437679 PRELID3BQ9Y3B1 194 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 NUBP2Q9Y5Y2 271 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 SMIM31A0A1B0GVY4 71 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 FCGR3BO75015 233 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 APOA1P02647 267 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 EGR2P11161 476 aaPredicted RBP11.85□□□□□ -0.51
LIMS3-201ENST00000437679 AADACP22760 399 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 CD40LGP29965 261 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 RAB9AP51151 201 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 RAB25P57735 213 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 GNB1P62873 340 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 CTF1Q16619 201 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 DEFB136Q30KP8 78 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 AKIRIN2Q53H80 203 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 ACTBL2Q562R1 376 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 C19orf54Q5BKX5 351 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 GPR107Q5VW38 600 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 REC114Q7Z4M0 266 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 GPR141Q7Z602 305 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 ZNF491Q8N8L2 437 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 LFNGQ8NES3 379 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 OR5AP2Q8NGF4 316 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 GRPEL2Q8TAA5 225 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 OSR1Q8TAX0 266 aaPredicted RBP11.85□□□□□ -0.51
LIMS3-201ENST00000437679 MYOZ3Q8TDC0 251 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 SNAPC3Q92966 411 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 HSD17B10Q99714 261 aaKnown RBP11.85□□□□□ -0.51
LIMS3-201ENST00000437679 DCUN1D5Q9BTE7 237 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 MCRIP2Q9BUT9 160 aaKnown RBP11.85□□□□□ -0.51
LIMS3-201ENST00000437679 NAA50Q9GZZ1 169 aaKnown RBP11.85□□□□□ -0.51
LIMS3-201ENST00000437679 VSIG4Q9Y279 399 aa11.85□□□□□ -0.51
LIMS3-201ENST00000437679 SRRM4A7MD48 611 aaKnown RBP11.84□□□□□ -0.51
LIMS3-201ENST00000437679 PPYP01298 95 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 IGLV2-14P01704 120 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 EIF4EP06730 217 aaKnown RBP11.84□□□□□ -0.51
LIMS3-201ENST00000437679 CRYGBP07316 175 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 PRSS3P35030 304 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 UBE2KP61086 200 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 CDK10Q15131 360 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 FOXB2Q5VYV0 432 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 PYHIN1Q6K0P9 492 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 MZT2AQ6P582 158 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 TEX45Q8NA69 505 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 OR5M8Q8NGP6 311 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 SECTM1Q8WVN6 248 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 AP3S1Q92572 193 aa11.84□□□□□ -0.51
LIMS3-201ENST00000437679 TNCP24821 2201 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 ARPC1BO15143 372 aaKnown RBP11.83□□□□□ -0.52
LIMS3-201ENST00000437679 SOX15O60248 233 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 PRB2P02812 416 aaPredicted RBP11.83□□□□□ -0.52
LIMS3-201ENST00000437679 ALDH3B2P48448 385 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 RPL30P62888 115 aaKnown RBP11.83□□□□□ -0.52
LIMS3-201ENST00000437679 PJVKQ0ZLH3 352 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 KIAA0141Q14154 515 aaPredicted RBP11.83□□□□□ -0.52
LIMS3-201ENST00000437679 MSMO1Q15800 293 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 OR2B11Q5JQS5 317 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 ZNF66Q6ZN08 573 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 OVCH2Q7RTZ1 564 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 TCTEX1D2Q8WW35 142 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 GIMAP1Q8WWP7 306 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 DPF1Q92782 380 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 SLC5A7Q9GZV3 580 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 GNB4Q9HAV0 340 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 TAS2R8Q9NYW2 309 aa11.83□□□□□ -0.52
LIMS3-201ENST00000437679 CREBL2O60519 120 aaPredicted RBP11.82□□□□□ -0.52
LIMS3-201ENST00000437679 HPGDSO60760 199 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 ZNF182P17025 639 aaPredicted RBP11.82□□□□□ -0.52
LIMS3-201ENST00000437679 TAS2R46P59540 309 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 FXYD4P59646 89 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 HERV-K104P61576 105 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 RUNX1Q01196 453 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 MFSD4AQ8N468 514 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 ZBTB34Q8NCN2 500 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 OR11H1Q8NG94 326 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 OR4S2Q8NH73 311 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 CASTOR1Q8WTX7 329 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 TMEM68Q96MH6 324 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 OR5B12Q96R08 314 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 CCL28Q9NRJ3 127 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 EHFQ9NZC4 300 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 ANAPC10Q9UM13 185 aa11.82□□□□□ -0.52
LIMS3-201ENST00000437679 PRKDCP78527 4128 aaKnown RBP11.82□□□□□ -0.52
LIMS3-201ENST00000437679 FAM25AB3EWG3 89 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 FAM25CB3EWG5 89 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 FAM25GB3EWG6 89 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 ACTL6BO94805 426 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms