RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 H0Y980 276 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 J3QRK9 145 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 CRYZL1O95825 349 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 CD37P11049 281 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 GNB3P16520 340 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 AADACP22760 399 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 GADD45AP24522 165 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 MAP2K4P45985 399 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 DYRK1AQ13627 763 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 TPBGQ13641 420 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 ARFRP1Q13795 201 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 TATDN3Q17R31 274 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 LCN12Q6JVE5 192 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 SPATA25Q9BR10 227 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 RAB22AQ9UL26 194 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 RYR2Q92736 4967 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 CRYGBP07316 175 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 MYL9P24844 172 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 TALDO1P37837 337 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 RANBP1P43487 201 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 OR10A3P58181 314 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 KLF5Q13887 457 aaPredicted RBP11.07□□□□□ -0.64
SDC1-204ENST00000429035 ADAMTSL5Q6ZMM2 481 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 TMEM68Q96MH6 324 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 C19orf73Q9NVV2 129 aa11.07□□□□□ -0.64
SDC1-204ENST00000429035 SACSQ9NZJ4 4579 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 LCE6AA0A183 80 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 MSGN1A6NI15 193 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 SRRM4A7MD48 611 aaKnown RBP11.06□□□□□ -0.64
SDC1-204ENST00000429035 PDCD5O14737 125 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 ACTL6BO94805 426 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 PRH1P02810 166 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 RRASP10301 218 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 HIST1H1DP16402 221 aaKnown RBP11.06□□□□□ -0.64
SDC1-204ENST00000429035 TAGLNQ01995 201 aaKnown RBP11.06□□□□□ -0.64
SDC1-204ENST00000429035 EXOSC2Q13868 293 aaKnown RBP11.06□□□□□ -0.64
SDC1-204ENST00000429035 TMEM177Q53S58 311 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 OR2B11Q5JQS5 317 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 ZNF343Q6P1L6 599 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 Q8N402 240 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 OR10R2Q8NGX6 335 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 DYNLRB2Q8TF09 96 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 SRSF12Q8WXF0 261 aaKnown RBP11.06□□□□□ -0.64
SDC1-204ENST00000429035 MGLLQ99685 303 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 DCUN1D5Q9BTE7 237 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 PLEKHA3Q9HB20 300 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 RETNQ9HD89 108 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 NKX1-2Q9UD57 310 aaPredicted RBP11.06□□□□□ -0.64
SDC1-204ENST00000429035 KCNK7Q9Y2U2 307 aa11.06□□□□□ -0.64
SDC1-204ENST00000429035 STARD9Q9P2P6 4700 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 TRBV6-7A0A0A0MS04 114 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 SMIM30A4D0T7 59 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 IZUMO1RA6ND01 250 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 MFNGO00587 321 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 IFNA6P05013 189 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 CSN3P07498 182 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 OR9G9P0C7N8 305 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 PSMD7P51665 324 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 UBE2KP61086 200 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 RHOGP84095 191 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 HAGHQ16775 308 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 ADAD2Q8NCV1 583 aaKnown RBP11.05□□□□□ -0.64
SDC1-204ENST00000429035 USMG5Q96IX5 58 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 ADTRPQ96IZ2 230 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 EDA2RQ9HAV5 297 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 ACOT13Q9NPJ3 140 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 PEMTQ9UBM1 199 aa11.05□□□□□ -0.64
SDC1-204ENST00000429035 LINC00473A8K010 186 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 A8MZ25 164 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 FCGR3BO75015 233 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 RBMXL2O75526 392 aaKnown RBP11.04□□□□□ -0.64
SDC1-204ENST00000429035 TUSC2O75896 110 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 OR2A4O95047 310 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 SAA1P0DJI8 122 aaPredicted RBP11.04□□□□□ -0.64
SDC1-204ENST00000429035 DUTP33316 252 aaKnown RBP11.04□□□□□ -0.64
SDC1-204ENST00000429035 CD81P60033 236 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 PRSS8Q16651 343 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 C10orf55Q5SWW7 151 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 IL34Q6ZMJ4 242 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 ZNF367Q7RTV3 350 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 PRSS48Q7RTY5 328 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 TEX45Q8NA69 505 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 SNAPC3Q92966 411 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 FAM110AQ9BQ89 295 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 ATG5Q9H1Y0 275 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 DUSP21Q9H596 190 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 AKIP1Q9NQ31 210 aa11.04□□□□□ -0.64
SDC1-204ENST00000429035 METTL21EPA6NDL7 271 aa11.03□□□□□ -0.64
SDC1-204ENST00000429035 CREBL2O60519 120 aaPredicted RBP11.03□□□□□ -0.64
SDC1-204ENST00000429035 RAB3BP20337 219 aa11.03□□□□□ -0.64
SDC1-204ENST00000429035 CRHBPP24387 322 aa11.03□□□□□ -0.64
SDC1-204ENST00000429035 ATP5G2Q06055 141 aa11.03□□□□□ -0.64
SDC1-204ENST00000429035 KCTD9Q7L273 389 aa11.03□□□□□ -0.64
SDC1-204ENST00000429035 H1FOOQ8IZA3 346 aaPredicted RBP11.03□□□□□ -0.64
SDC1-204ENST00000429035 NRG4Q8WWG1 115 aa11.03□□□□□ -0.64
SDC1-204ENST00000429035 CNBD2Q96M20 576 aa11.03□□□□□ -0.64
SDC1-204ENST00000429035 ZNF430Q9H8G1 570 aaPredicted RBP11.03□□□□□ -0.64
SDC1-204ENST00000429035 IGKV1D-8A0A087WSZ0 117 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 SHISA3A0PJX4 238 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 FAM223BA6NKX1 122 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms