RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 STEAP1BQ6NZ63 245 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 MFSD4AQ8N468 514 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 WIPF2Q8TF74 440 aaPredicted RBP16.06■□□□□ 0.16
PTCD3-202ENST00000409326 HARBI1Q96MB7 349 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 KCNAB3O43448 404 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 TNFSF12O43508 249 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 RAB3DO95716 219 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 HLA-DRB1P01911 266 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 LGALS7P47929 136 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 ZNF79Q15937 498 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 AADACL3Q5VUY0 350 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 OR4D10Q8NGI6 311 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 TCTEX1D2Q8WW35 142 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 GPHA2Q96T91 129 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 HSPB9Q9BQS6 159 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 FBXL15Q9H469 300 aa16.05■□□□□ 0.16
PTCD3-202ENST00000409326 TET2Q6N021 2002 aaPredicted RBP16.05■□□□□ 0.16
PTCD3-202ENST00000409326 SHOXO15266 292 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 FCGR3BO75015 233 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 CRYZL1O95825 349 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 IGLV2-23P01705 113 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 MEF2DQ14814 521 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 PSG5Q15238 335 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 PYDC2Q56P42 97 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 LIN54Q6MZP7 749 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 LHFPL1Q86WI0 220 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 FOXRED2Q8IWF2 684 aa16.04■□□□□ 0.16
PTCD3-202ENST00000409326 OSR1Q8TAX0 266 aaPredicted RBP16.04■□□□□ 0.16
PTCD3-202ENST00000409326 METTL1Q9UBP6 276 aaKnown RBP16.04■□□□□ 0.16
PTCD3-202ENST00000409326 ANKRD20A5PA0PJZ0 165 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 LINC01548A6NM66 108 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 AP4M1O00189 453 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 AKAIN1P0CW23 69 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 KIR2DS2P43631 304 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 UCP3P55916 312 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 CATR1Q13166 79 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 PLGLAQ15195 96 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 OR2B11Q5JQS5 317 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 LPCAT3Q6P1A2 487 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 OR4S2Q8NH73 311 aa16.03■□□□□ 0.16
PTCD3-202ENST00000409326 THAP7Q9BT49 309 aaPredicted RBP16.03■□□□□ 0.16
PTCD3-202ENST00000409326 IGHV7-81A0A0B4J1V7 117 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 SRRM4A7MD48 611 aaKnown RBP16.02■□□□□ 0.16
PTCD3-202ENST00000409326 GPR31O00270 319 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 SLC25A17O43808 307 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 BRWD1-AS2P59051 145 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 CMTM1Q8IZ96 169 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 Q8N402 240 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 CHPT1Q8WUD6 406 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 TRIM63Q969Q1 353 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 NOL4LQ96MY1 436 aaPredicted RBP16.02■□□□□ 0.16
PTCD3-202ENST00000409326 RSRP1Q9BUV0 290 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 BATF3Q9NR55 127 aa16.02■□□□□ 0.16
PTCD3-202ENST00000409326 TNCP24821 2201 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 ZNF735P0CB33 412 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 CNPY1Q3B7I2 92 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 FAAP20Q6NZ36 180 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 CENPVQ7Z7K6 275 aaPredicted RBP16.01■□□□□ 0.15
PTCD3-202ENST00000409326 SLC38A6Q8IZM9 456 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 STPG2Q8N412 459 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 OR4C16Q8NGL9 310 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 SRRQ9GZT4 340 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 TPSG1Q9NRR2 321 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 ZNF580Q9UK33 172 aa16.01■□□□□ 0.15
PTCD3-202ENST00000409326 RBFOX2O43251 390 aaKnown RBP eCLIP16■□□□□ 0.15
PTCD3-202ENST00000409326 FBXO24O75426 580 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 PGLYRP1O75594 196 aaPredicted RBP16■□□□□ 0.15
PTCD3-202ENST00000409326 RLN1P04808 185 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 IGF1P05019 195 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 CRYGBP07316 175 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 UBE2KP61086 200 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 VMA21Q3ZAQ7 101 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 OR5AU1Q8NGC0 362 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 OR51H1Q8NH63 302 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 TERB2Q8NHR7 220 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 OR51J1Q9H342 316 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 LINC00527Q9UJ94 153 aa16■□□□□ 0.15
PTCD3-202ENST00000409326 PSMB11A5LHX3 300 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 DISC1C4P0D8 188 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 FCN1O00602 326 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 RAMP3O60896 148 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 NDPQ00604 133 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 SCGB2B2Q4G0G5 96 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 PPP1R27Q86WC6 154 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 SPAG16Q8N0X2 631 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 C11orf44Q8N8P7 122 aa15.99■□□□□ 0.15
PTCD3-202ENST00000409326 TRRAPQ9Y4A5 3859 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 ATP6V0E1O15342 81 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 CA2P00918 260 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 SAA1P0DJI8 122 aaPredicted RBP15.98■□□□□ 0.15
PTCD3-202ENST00000409326 CD28P10747 220 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 PGAM2P15259 253 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 S100GP29377 79 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 PPP5CP53041 499 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 CX3CL1P78423 397 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 KLF9Q13886 244 aaPredicted RBP15.98■□□□□ 0.15
PTCD3-202ENST00000409326 PHLDA2Q53GA4 152 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 C10orf99Q6UWK7 81 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 TEX45Q8NA69 505 aa15.98■□□□□ 0.15
PTCD3-202ENST00000409326 POC5Q8NA72 575 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms