RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 C5orf30Q96GV9 206 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 FYTTD1Q96QD9 318 aaKnown RBP12.47□□□□□ -0.41
CLN3-201ENST00000333496 MRPS7Q9Y2R9 242 aaKnown RBP12.47□□□□□ -0.41
CLN3-201ENST00000333496 A0A0A6YYH2 397 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 A6NJ64 397 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 NDUFA3O95167 84 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 DHFRP00374 187 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 PTHLHP12272 177 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 FOXRED2Q8IWF2 684 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 ZNF383Q8NA42 475 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 NPBQ8NG41 125 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 OR4X2Q8NGF9 303 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 ZFAND1Q8TCF1 268 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 OR2D2Q9H210 308 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 DIABLOQ9NR28 239 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 SDHAF2Q9NX18 166 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 GAB2Q9UQC2 676 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 NUBP2Q9Y5Y2 271 aa12.46□□□□□ -0.41
CLN3-201ENST00000333496 A0A1W2PRX2 142 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 TCRBV4S1A1TA0A5B7 111 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 AP4M1O00189 453 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 NBR2O15453 112 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 XRCC3O43542 346 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 GSTZ1O43708 216 aaPredicted RBP12.45□□□□□ -0.42
CLN3-201ENST00000333496 TPPPO94811 219 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 OPN1MWP04001 364 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 OPN1MW2P0DN77 364 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 OPN1MW3P0DN78 364 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 MC5RP33032 325 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.45□□□□□ -0.42
CLN3-201ENST00000333496 R3HDM4Q96D70 268 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 GINS4Q9BRT9 223 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 GON7Q9BXV9 100 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 ZNF107Q9UII5 783 aaPredicted RBP12.45□□□□□ -0.42
CLN3-201ENST00000333496 WASHC3Q9Y3C0 194 aa12.45□□□□□ -0.42
CLN3-201ENST00000333496 C7orf66A4D0T2 115 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 KCNAB3O43448 404 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 RCVRNP35243 200 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 TAS2R20P59543 309 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 C5orf64Q2M2E5 130 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 TOMM5Q8N4H5 51 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 GVQW1Q8N7I0 195 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 C15orf40Q8WUR7 153 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 AUNIPQ9H7T9 357 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 TSSC4Q9Y5U2 329 aaPredicted RBP12.44□□□□□ -0.42
CLN3-201ENST00000333496 MEGF8Q7Z7M0 2845 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 H7C2Y5 167 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 M0R1X1 148 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 HLA-DRB1P01911 266 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 IGKV1-16P04430 117 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 MCUBQ9NWR8 336 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 ANXA10Q9UJ72 324 aa12.44□□□□□ -0.42
CLN3-201ENST00000333496 IGHV7-81A0A0B4J1V7 117 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 IGF1P05019 195 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 NFYAP23511 347 aaPredicted RBP12.43□□□□□ -0.42
CLN3-201ENST00000333496 BTCP35070 178 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 DGCR2P98153 550 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 CFHR3Q02985 330 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 DYRK1AQ13627 763 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 SLC7A5P1Q8MH63 180 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 OR4F17Q8NGA8 305 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 SMIM4Q8WVI0 70 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 OR4F4Q96R69 305 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 FBXL15Q9H469 300 aa12.43□□□□□ -0.42
CLN3-201ENST00000333496 RRHO14718 337 aa12.42□□□□□ -0.42
CLN3-201ENST00000333496 CTXN2P0C2S0 81 aa12.42□□□□□ -0.42
CLN3-201ENST00000333496 SLC35B1P78383 322 aa12.42□□□□□ -0.42
CLN3-201ENST00000333496 MRPS10P82664 201 aaKnown RBP12.42□□□□□ -0.42
CLN3-201ENST00000333496 RNASE12Q5GAN4 147 aaKnown RBP12.42□□□□□ -0.42
CLN3-201ENST00000333496 LIN54Q6MZP7 749 aa12.42□□□□□ -0.42
CLN3-201ENST00000333496 RNF5Q99942 180 aa12.42□□□□□ -0.42
CLN3-201ENST00000333496 KIAA1456Q9P272 454 aa12.42□□□□□ -0.42
CLN3-201ENST00000333496 RBM7Q9Y580 266 aaKnown RBP12.42□□□□□ -0.42
CLN3-201ENST00000333496 GABARAPH6UMI1 98 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 FCN1O00602 326 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 RBBP9O75884 186 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 AP3S2P59780 193 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 KHDC1LQ5JSQ8 128 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 C18orf65Q6ZTR6 163 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 HOGA1Q86XE5 327 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 PDPNQ86YL7 162 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 BEST4Q8NFU0 473 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 HYLS1Q96M11 299 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 MED28Q9H204 178 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 OR51J1Q9H342 316 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 SLC35D1Q9NTN3 355 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 ZNF580Q9UK33 172 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 OR2W1Q9Y3N9 320 aa12.41□□□□□ -0.42
CLN3-201ENST00000333496 IGKV1D-13A0A0B4J2D9 117 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 NAP1L6A6NFF2 107 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 ATP6V0E1O15342 81 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 IGLV2-14P01704 120 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 APOA2P02652 100 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 TCRBP04435 133 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 FCER2P06734 321 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 IGKV1-13P0DP09 117 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 NOTCH1P46531 2555 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 NDPQ00604 133 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 PSG5Q15238 335 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 TEX38Q6PEX7 206 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms