RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PYDC2Q56P42 97 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 ZNF66Q6ZN08 573 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 CCDC190Q86UF4 302 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 FOXRED2Q8IWF2 684 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 MFSD4AQ8N468 514 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 C11orf44Q8N8P7 122 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 ZBTB34Q8NCN2 500 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 OR6Q1Q8NGQ2 317 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 NOL4LQ96MY1 436 aaPredicted RBP12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 METTL1Q9UBP6 276 aaKnown RBP12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 LINC00527Q9UJ94 153 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 SHOXO15266 292 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 KCNAB3O43448 404 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 SLC25A17O43808 307 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 SPDEFO95238 335 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 RAB3DO95716 219 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 HLA-DRB1P01911 266 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 GNRHRP30968 328 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 SPANXN2Q5MJ10 180 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 HIST2H2BDQ6DRA6 164 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 LIN54Q6MZP7 749 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 STEAP1BQ6NZ63 245 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 CENPVQ7Z7K6 275 aaPredicted RBP12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 OR4D10Q8NGI6 311 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 BORCS5Q969J3 196 aa12.56□□□□□ -0.4
CCDC28A-201ENST00000332797 CD74P04233 296 aa12.55□□□□□ -0.4
CCDC28A-201ENST00000332797 LGALS7P47929 136 aa12.55□□□□□ -0.4
CCDC28A-201ENST00000332797 ARRDC1Q8N5I2 433 aa12.55□□□□□ -0.4
CCDC28A-201ENST00000332797 CLCC1Q96S66 551 aa12.55□□□□□ -0.4
CCDC28A-201ENST00000332797 TPSG1Q9NRR2 321 aa12.55□□□□□ -0.4
CCDC28A-201ENST00000332797 AP4M1O00189 453 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 FBXO24O75426 580 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 IGLV2-23P01705 113 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 CD28P10747 220 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 CATR1Q13166 79 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 ZNF79Q15937 498 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 SCGB2B2Q4G0G5 96 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 AADACL3Q5VUY0 350 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 FAAP20Q6NZ36 180 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 STPG2Q8N412 459 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 OR5AU1Q8NGC0 362 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 OR51H1Q8NH63 302 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 OR4S2Q8NH73 311 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 WIPF2Q8TF74 440 aaPredicted RBP12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 CHPT1Q8WUD6 406 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 THAP7Q9BT49 309 aaPredicted RBP12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 PARP11Q9NR21 331 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 PTTG2Q9NZH5 202 aa12.54□□□□□ -0.4
CCDC28A-201ENST00000332797 IGHV7-81A0A0B4J1V7 117 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 PSMB11A5LHX3 300 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 GPR31O00270 319 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 RLN1P04808 185 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 AKAIN1P0CW23 69 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 PTBP1P26599 531 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 KIR2DS2P43631 304 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 PPP5CP53041 499 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 MEF2DQ14814 521 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 PHLDA2Q53GA4 152 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 LPCAT3Q6P1A2 487 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 C10orf99Q6UWK7 81 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 CMTM1Q8IZ96 169 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 Q8N402 240 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 OSR1Q8TAX0 266 aaPredicted RBP12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 ANKRD20A5PA0PJZ0 165 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 SRRM4A7MD48 611 aaKnown RBP12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 FCN1O00602 326 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 ATP6V0E1O15342 81 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 CA2P00918 260 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 PGAM2P15259 253 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 ETV6P41212 452 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 BRWD1-AS2P59051 145 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 VMA21Q3ZAQ7 101 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 ZNF329Q86UD4 541 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 LHFPL1Q86WI0 220 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 SLC38A6Q8IZM9 456 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 SPAG16Q8N0X2 631 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 OR4C16Q8NGL9 310 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 RSRP1Q9BUV0 290 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 OR51J1Q9H342 316 aa12.53□□□□□ -0.4
CCDC28A-201ENST00000332797 DISC1C4P0D8 188 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 RAMP3O60896 148 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 PGLYRP1O75594 196 aaPredicted RBP12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 ZNF735P0CB33 412 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 UCP3P55916 312 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 SLC35B1P78383 322 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 CX3CL1P78423 397 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 NDPQ00604 133 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 PPP1R27Q86WC6 154 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 POC5Q8NA72 575 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 OR4X2Q8NGF9 303 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 ABHD5Q8WTS1 349 aa12.52□□□□□ -0.41
CCDC28A-201ENST00000332797 IGF1P05019 195 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 CRYGBP07316 175 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 SAA1P0DJI8 122 aaPredicted RBP12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 VDAC1P21796 283 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 S100GP29377 79 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 UBE2KP61086 200 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 GNB1P62873 340 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 IDO2Q6ZQW0 420 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 VKORC1L1Q8N0U8 176 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms