RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 DGCR2P98153 550 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 DYRK1AQ13627 763 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 IL18Q14116 193 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 ZNF660Q6AZW8 331 aaPredicted RBP13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 DHRS11Q6UWP2 260 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 OR8H1Q8NGG4 311 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 FCAMRQ8WWV6 532 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 RITA1Q96K30 269 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 SOSTQ9BQB4 213 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 MTFP1Q9UDX5 166 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 WASHC3Q9Y3C0 194 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 GABARAPH6UMI1 98 aa13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 RBBP9O75884 186 aa13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 SLC22A5O76082 557 aa13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 ACTBP60709 375 aa13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 MRPS10P82664 201 aaKnown RBP13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 Q8N9W7 124 aa13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 WFDC12Q8WWY7 111 aa13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 SERTAD4Q9NUC0 356 aa13.15□□□□□ -0.3
CCDC28A-202ENST00000611852 FABP12A6NFH5 140 aa13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 H7C2Y5 167 aa13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 CTDSPLO15194 276 aa13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 FAM71E2Q8N5Q1 922 aa13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 SMIM4Q8WVI0 70 aa13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 ZNF747Q9BV97 191 aa13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 RBMX2Q9Y388 322 aaKnown RBP13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 V9GYH0 126 aa13.14□□□□□ -0.31
CCDC28A-202ENST00000611852 HAX1O00165 279 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 APOA2P02652 100 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 IGKV1-16P04430 117 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 CNTFRP26992 372 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 DUTP33316 252 aaKnown RBP13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 THBS3P49746 956 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 MMDQ15546 238 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 SECTM1Q8WVN6 248 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 ZNF2Q9BSG1 426 aaPredicted RBP13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 CCDC32Q9BV29 185 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 LIN7CQ9NUP9 197 aaKnown RBP13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 LINC00473A8K010 186 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 PTBP1P26599 531 aaKnown RBP eCLIP13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 FXYD4P59646 89 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 SSBP1Q04837 148 aaKnown RBP13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 TMEM95Q3KNT9 176 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 ACTBL2Q562R1 376 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 ARSJQ5FYB0 599 aaPredicted RBP13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 C9orf152Q5JTZ5 239 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 PDPNQ86YL7 162 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 NPBQ8NG41 125 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 OR6F1Q8NGZ6 308 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 DDB2Q92466 427 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 MOB3AQ96BX8 217 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 ADTRPQ96IZ2 230 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 SLC5A7Q9GZV3 580 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 CCL28Q9NRJ3 127 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 SLC35D1Q9NTN3 355 aa13.13□□□□□ -0.31
CCDC28A-202ENST00000611852 DNHD1Q96M86 4753 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 M0QYG6 137 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 NBR2O15453 112 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 UPK1BO75841 260 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 CD3DP04234 171 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 VDAC2P45880 294 aaPredicted RBP13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 KRTAP10-3P60369 221 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 HERV-K104P61576 105 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 TAGLNQ01995 201 aaKnown RBP13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 EIF4EBP1Q13541 118 aaPredicted RBP13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 MSMO1Q15800 293 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 VAX1Q5SQQ9 334 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 TMEM17Q86X19 198 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 RNF5Q99942 180 aa13.12□□□□□ -0.31
CCDC28A-202ENST00000611852 GSTZ1O43708 216 aaPredicted RBP13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 NDUFA3O95167 84 aa13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 TBPP20226 339 aa13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 TSPAN5P62079 268 aa13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 SRSF4Q08170 494 aaKnown RBP13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 RNASE10Q5GAN6 216 aaKnown RBP13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 KLHDC1Q8N7A1 406 aa13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 TMEM229BQ8NBD8 167 aa13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 FLYWCH2Q96CP2 140 aaKnown RBP13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 RASL11BQ9BPW5 248 aa13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 TINAGL1Q9GZM7 467 aaPredicted RBP13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 WNT10AQ9GZT5 417 aa13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 ZNF107Q9UII5 783 aaPredicted RBP13.11□□□□□ -0.31
CCDC28A-202ENST00000611852 CD74P04233 296 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 VSIG10L2P0DP72 767 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 TAS2R19P59542 299 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 RPL30P62888 115 aaKnown RBP13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 ZNF79Q15937 498 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 RTL8BQ17RB0 113 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 PYDC2Q56P42 97 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 SHISA2Q6UWI4 295 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 ZNF818PQ6ZRF7 136 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 KCTD9Q7L273 389 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 GDPD1Q8N9F7 314 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 ZBTB34Q8NCN2 500 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 BVESQ8NE79 360 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 HSD17B10Q99714 261 aaKnown RBP13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 SRRQ9GZT4 340 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 TAS2R8Q9NYW2 309 aa13.1□□□□□ -0.31
CCDC28A-202ENST00000611852 PEX14O75381 377 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 IGHG2P01859 326 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms