RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SPDEFO95238 335 aa11.47□□□□□ -0.57
CLN3-236ENST00000568558 TFAP2AP05549 437 aa11.47□□□□□ -0.57
CLN3-236ENST00000568558 ZBTB25P24278 435 aa11.47□□□□□ -0.57
CLN3-236ENST00000568558 PSMA1P25786 263 aaKnown RBP11.47□□□□□ -0.57
CLN3-236ENST00000568558 CALRP27797 417 aaKnown RBP11.47□□□□□ -0.57
CLN3-236ENST00000568558 CEACAM6P40199 344 aa11.47□□□□□ -0.57
CLN3-236ENST00000568558 SRSF7Q16629 238 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLN3-236ENST00000568558 ZNF773Q6PK81 442 aa11.47□□□□□ -0.57
CLN3-236ENST00000568558 TSNAXQ99598 290 aaKnown RBP11.47□□□□□ -0.57
CLN3-236ENST00000568558 ZMAT4Q9H898 229 aa11.47□□□□□ -0.57
CLN3-236ENST00000568558 FOXI3A8MTJ6 420 aaPredicted RBP11.46□□□□□ -0.57
CLN3-236ENST00000568558 HSPA12AO43301 675 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 TRGV3P03979 118 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 IGKV1-16P04430 117 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 PSMB9P28065 219 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 CD40LGP29965 261 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 P2RY14Q15391 338 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 HAPLN4Q86UW8 402 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 FAM89BQ8N5H3 189 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 ZNF383Q8NA42 475 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 DRAXINQ8NBI3 349 aaPredicted RBP11.46□□□□□ -0.57
CLN3-236ENST00000568558 PTX4Q96A99 478 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 TM2D3Q9BRN9 247 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 URM1Q9BTM9 101 aaKnown RBP11.46□□□□□ -0.57
CLN3-236ENST00000568558 MGAT4AQ9UM21 535 aa11.46□□□□□ -0.57
CLN3-236ENST00000568558 ARL6IP5O75915 188 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 IGLV1-51P01701 117 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 SCTP09683 121 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 CLDN12P56749 244 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 OR10A3P58181 314 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 LINC00205P59089 165 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 KCTD21Q4G0X4 260 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 PDPNQ86YL7 162 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 Q8N1Y9 231 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 POC5Q8NA72 575 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 CITED4Q96RK1 184 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 ELOVL1Q9BW60 279 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 Q9N2K0 584 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 C12orf4Q9NQ89 552 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 HSF4Q9ULV5 492 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 STUB1Q9UNE7 303 aa11.45□□□□□ -0.58
CLN3-236ENST00000568558 TRDV1A0A1B0GX56 115 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 H3BUA1 57 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 APOA2P02652 100 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 IGHV4-30-4P0DP06 118 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 LYL1P12980 280 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 ARSBP15848 533 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 TMEM50BP56557 158 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 RPS16P62249 146 aaKnown RBP11.44□□□□□ -0.58
CLN3-236ENST00000568558 SSBP2P81877 361 aaPredicted RBP11.44□□□□□ -0.58
CLN3-236ENST00000568558 FXYD3Q14802 87 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 GRPEL2Q8TAA5 225 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 FCGR1BQ92637 280 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 PLGRKTQ9HBL7 147 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 RANGRFQ9HD47 186 aaPredicted RBP11.44□□□□□ -0.58
CLN3-236ENST00000568558 ZNF221Q9UK13 617 aa11.44□□□□□ -0.58
CLN3-236ENST00000568558 TNCP24821 2201 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 IGKV1-6A0A0C4DH72 117 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 SLC17A2O00624 439 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 LDLRAD4O15165 306 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 SLC25A17O43808 307 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 ZP3P21754 424 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 PLA2G7Q13093 441 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 NEDD8Q15843 81 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 C22orf42Q6IC83 251 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 ANKRD13BQ86YJ7 626 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 ARHGAP5-AS1Q96IT6 56 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 RSRP1Q9BUV0 290 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 PALMDQ9NP74 551 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 ZNF355PQ9NSJ1 428 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 C19orf73Q9NVV2 129 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 RDH8Q9NYR8 311 aa11.43□□□□□ -0.58
CLN3-236ENST00000568558 EPPK1P58107 5090 aaKnown RBP11.42□□□□□ -0.58
CLN3-236ENST00000568558 C13orf42A0A1B0GVH6 325 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 SMIM30A4D0T7 59 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 A8MZ25 164 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 M0R1X1 148 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 VEGFCP49767 419 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 RAB11BQ15907 218 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 HES5Q5TA89 166 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 NR2C2APQ86WQ0 139 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.42□□□□□ -0.58
CLN3-236ENST00000568558 OR5T1Q8NG75 326 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 CMSS1Q9BQ75 279 aaKnown RBP11.42□□□□□ -0.58
CLN3-236ENST00000568558 PECRQ9BY49 303 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 SLC35D1Q9NTN3 355 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 V9GY05 133 aa11.42□□□□□ -0.58
CLN3-236ENST00000568558 A0A0B4J203 849 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 TRAV1-2A0A0B4J238 106 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 A0A0G2JLM5 398 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 TRDCB7Z8K6 153 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 IGLV2-23P01705 113 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 MOGAT2Q3SYC2 334 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 SGPP2Q8IWX5 399 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 OR51E2Q9H255 320 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 EDA2RQ9HAV5 297 aa11.41□□□□□ -0.58
CLN3-236ENST00000568558 TXNL4BQ9NX01 149 aaKnown RBP11.41□□□□□ -0.58
CLN3-236ENST00000568558 LCE6AA0A183 80 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 ANKRD34BA5PLL1 514 aa11.4□□□□□ -0.58
CLN3-236ENST00000568558 CNIH1O95406 144 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms