RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 A1L4Q6 167 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 TOR1AO14656 332 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 FGF16O43320 207 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 SYNGR2O43760 224 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 RAMP3O60896 148 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 MED6O75586 246 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 PPOXP50336 477 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 RPL31P62899 125 aaKnown RBP13.91□□□□□ -0.18
LDLR-206ENST00000557958 ZNF816Q0VGE8 651 aaPredicted RBP13.91□□□□□ -0.18
LDLR-206ENST00000557958 OR2B11Q5JQS5 317 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 TMEM252Q8N6L7 170 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 RAB39BQ96DA2 213 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 IFI27L2Q9H2X8 130 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 KAAG1Q9UBP8 84 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 ZNF462Q96JM2 2506 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 FAM24AA6NFZ4 105 aa13.91□□□□□ -0.18
LDLR-206ENST00000557958 RBFOX2O43251 390 aaKnown RBP eCLIP13.91□□□□□ -0.18
LDLR-206ENST00000557958 DUTP33316 252 aaKnown RBP13.91□□□□□ -0.18
LDLR-206ENST00000557958 SAT2Q96F10 170 aaPredicted RBP13.91□□□□□ -0.18
LDLR-206ENST00000557958 C17orf98A8MV24 154 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 NUDT19A8MXV4 375 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 M0R1X1 148 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 RAB29O14966 203 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 S1PR2O95136 353 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 KRASP01116 189 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 NFYBP25208 207 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 TAS2R30P59541 319 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 NHLH2Q02577 135 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 SRSF1Q07955 248 aaKnown RBP eCLIP13.9□□□□□ -0.183e-6■□□□□ 11.3
LDLR-206ENST00000557958 H2BFWTQ7Z2G1 175 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 ADTRPQ96IZ2 230 aa13.9□□□□□ -0.18
LDLR-206ENST00000557958 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.9□□□□□ -0.18
LDLR-206ENST00000557958 SPTBN1Q01082 2364 aaKnown RBP13.9□□□□□ -0.18
LDLR-206ENST00000557958 IGSF23A1L1A6 192 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 RAB19A4D1S5 217 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 LINC00473A8K010 186 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 NXPH3O95157 252 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 FSTL3O95633 263 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 G6PCP35575 357 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 Q6ZRM9 215 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 TCF23Q7RTU1 214 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 ZNF714Q96N38 554 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 ARV1Q9H2C2 271 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 UBTD1Q9HAC8 227 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 RPUSD1Q9UJJ7 312 aaKnown RBP13.89□□□□□ -0.19
LDLR-206ENST00000557958 ARID1AO14497 2285 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 DSCAMO60469 2012 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 ROS1P08922 2347 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 ZNF705EA8MWA4 302 aaPredicted RBP13.89□□□□□ -0.19
LDLR-206ENST00000557958 TEX46H3BTG2 121 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 HPRT1P00492 218 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 APOC3P02656 99 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 SEC11BP0C7V7 166 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 DAOP14920 347 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 IGFBP2P18065 325 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 ARHGDIBP52566 201 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 S1PR3Q99500 378 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 GINS3Q9BRX5 216 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 CACFD1Q9UGQ2 172 aa13.89□□□□□ -0.19
LDLR-206ENST00000557958 RAI1Q7Z5J4 1906 aaPredicted RBP13.88□□□□□ -0.19
LDLR-206ENST00000557958 A6NNC1 897 aa13.88□□□□□ -0.19
LDLR-206ENST00000557958 KIAA1324LA8MWY0 1029 aaPredicted RBP13.88□□□□□ -0.19
LDLR-206ENST00000557958 DNASE2O00115 360 aaPredicted RBP13.88□□□□□ -0.19
LDLR-206ENST00000557958 SULT1A2P50226 295 aa13.88□□□□□ -0.19
LDLR-206ENST00000557958 ERVK-16P61578 105 aa13.88□□□□□ -0.19
LDLR-206ENST00000557958 BLOC1S1P78537 153 aa13.88□□□□□ -0.19
LDLR-206ENST00000557958 IZUMO4Q1ZYL8 232 aa13.88□□□□□ -0.19
LDLR-206ENST00000557958 RAB1BQ9H0U4 201 aa13.88□□□□□ -0.19
LDLR-206ENST00000557958 A0A1W2PPR1 153 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 MARCH11A6NNE9 402 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 FAM90A9PA6NNJ1 464 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 TNFRSF13BO14836 293 aaPredicted RBP13.87□□□□□ -0.19
LDLR-206ENST00000557958 FCGR3BO75015 233 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 FBXO24O75426 580 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 TSPAN9O75954 239 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 DFFBO76075 338 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 P0C879 139 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 THBS3P49746 956 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 SULT1A1P50225 295 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 ZNF134P52741 427 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 TNFRSF9Q07011 255 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 CT45A1Q5HYN5 189 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 NCR3LG1Q68D85 454 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 CLEC9AQ6UXN8 241 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 HEPN1Q6WQI6 88 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 OR1S2Q8NGQ3 325 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 OR4S2Q8NH73 311 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 CT45A3Q8NHU0 189 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 H1FXQ92522 213 aaKnown RBP13.87□□□□□ -0.19
LDLR-206ENST00000557958 SMIM8Q96KF7 97 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 C19orf12Q9NSK7 152 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 CBLN4Q9NTU7 201 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 HSPB7Q9UBY9 170 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 RBMXL2O75526 392 aaKnown RBP13.87□□□□□ -0.19
LDLR-206ENST00000557958 LY86O95711 162 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 TMEM50AO95807 157 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 FAM157CP0CG43 387 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 RAB5CP51148 216 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 BRWD1-AS2P59051 145 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 UBE2KP61086 200 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms