RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 RNF5Q99942 180 aa9.66□□□□□ -0.86
SHMT2-223ENST00000556689 ZNF355PQ9NSJ1 428 aa9.66□□□□□ -0.86
SHMT2-223ENST00000556689 RSL24D1Q9UHA3 163 aaKnown RBP9.66□□□□□ -0.86
SHMT2-223ENST00000556689 STEAP1Q9UHE8 339 aa9.66□□□□□ -0.86
SHMT2-223ENST00000556689 A0A0G2JLM5 398 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 OR5H14A6NHG9 310 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 H7C2Y5 167 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 RBBP9O75884 186 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 MGMTP16455 207 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 FSTP19883 344 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 FGF9P31371 208 aaPredicted RBP9.65□□□□□ -0.86
SHMT2-223ENST00000556689 FABP5Q01469 135 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 TATDN3Q17R31 274 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 MOGAT2Q3SYC2 334 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 AWAT2Q6E213 333 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 SIGIRRQ6IA17 410 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 C22orf42Q6IC83 251 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 JAGN1Q8N5M9 183 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 DERL3Q96Q80 235 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 HIPK2Q9H2X6 1198 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 IFI27L2Q9H2X8 130 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 ABRACLQ9P1F3 81 aa9.65□□□□□ -0.86
SHMT2-223ENST00000556689 METTL1Q9UBP6 276 aaKnown RBP9.65□□□□□ -0.86
SHMT2-223ENST00000556689 TRAV8-7A0A075B6U6 113 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 TRBV5-5A0A0J9YX44 114 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 ANKRD34BA5PLL1 514 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 H0YJW9 148 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 ST8SIA5O15466 376 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 PDCD6O75340 191 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 CRTAPO75718 401 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-223ENST00000556689 PSMD7P51665 324 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 SYNJ2BPP57105 145 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 PSG5Q15238 335 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 RPL39P5Q59GN2 51 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 LCN12Q6JVE5 192 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 GLDNQ6ZMI3 551 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-223ENST00000556689 TPRA1Q86W33 373 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 CROCCP3Q8IVE0 287 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 CDH26Q8IXH8 852 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 OR13C5Q8NGS8 318 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 IL1F10Q8WWZ1 152 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 Q96M66 194 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 THAP7Q9BT49 309 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-223ENST00000556689 OR51E2Q9H255 320 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 RETNQ9HD89 108 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 TXNL4BQ9NX01 149 aaKnown RBP9.64□□□□□ -0.87
SHMT2-223ENST00000556689 SIGLEC8Q9NYZ4 499 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 WASHC3Q9Y3C0 194 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 CEPT1Q9Y6K0 416 aa9.64□□□□□ -0.87
SHMT2-223ENST00000556689 H3BUA1 57 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 CA2P00918 260 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 UCHL1P09936 223 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 SERPINB10P48595 397 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 LSM3P62310 102 aaKnown RBP9.63□□□□□ -0.87
SHMT2-223ENST00000556689 FXYD3Q14802 87 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 HMGN3Q15651 99 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 LINC00322Q6ZN03 302 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-223ENST00000556689 Q8N402 240 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 POC5Q8NA72 575 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 OR5T1Q8NG75 326 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 OR5AN1Q8NGI8 311 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 AP3S1Q92572 193 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 DGCR14Q96DF8 476 aaKnown RBP9.63□□□□□ -0.87
SHMT2-223ENST00000556689 CYYR1Q96J86 154 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 TSNAXQ99598 290 aaKnown RBP9.63□□□□□ -0.87
SHMT2-223ENST00000556689 SLC23A1Q9UHI7 598 aa9.63□□□□□ -0.87
SHMT2-223ENST00000556689 TRAV1-2A0A0B4J238 106 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 A0A1W2PPK0 400 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 SHISA3A0PJX4 238 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 DPPA5A6NC42 116 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 H3BMQ9 156 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 SLC25A17O43808 307 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 CSN3P07498 182 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 SRMP19623 302 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 RAB3BP20337 219 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 RPS11P62280 158 aaKnown RBP eCLIP9.62□□□□□ -0.87
SHMT2-223ENST00000556689 GLT8D1Q68CQ7 371 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 GRPEL2Q8TAA5 225 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 ABHD14BQ96IU4 210 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 NEDD4LQ96PU5 975 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 FAM110AQ9BQ89 295 aa9.62□□□□□ -0.87
SHMT2-223ENST00000556689 PEF1Q9UBV8 284 aaKnown RBP9.62□□□□□ -0.87
SHMT2-223ENST00000556689 TRBV5-7A0A0A0MS05 114 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 IZUMO1RA6ND01 250 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 TMEM127O75204 238 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 SPDEFO95238 335 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 CNIH1O95406 144 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 SNRPBP14678 240 aaKnown RBP9.61□□□□□ -0.87
SHMT2-223ENST00000556689 AADACP22760 399 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 VBP1P61758 197 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 RPS16P62249 146 aaKnown RBP9.61□□□□□ -0.87
SHMT2-223ENST00000556689 FAM46BQ96A09 425 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 SULT4A1Q9BR01 284 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 FAAP24Q9BTP7 215 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 CENPOQ9BU64 300 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 DCSTAMPQ9H295 470 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 PLGRKTQ9HBL7 147 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 GHRLQ9UBU3 117 aa9.61□□□□□ -0.87
SHMT2-223ENST00000556689 ITGB1BP1O14713 200 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 TPPPO94811 219 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms