RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 DCTN5Q9BTE1 182 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 IGHV3-72A0A0B4J1Y9 119 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 TRAV8-6A0A0B4J262 113 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 CEACAM4O75871 244 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 ERGP11308 486 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 MS4A3Q96HJ5 214 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 ZNF414Q96IQ9 312 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 CITED2Q99967 270 aaPredicted RBP9.01□□□□□ -0.97
PCDH9-204ENST00000544246 PLSCR2Q9NRY7 297 aa9.01□□□□□ -0.97
PCDH9-204ENST00000544246 FER1L6Q2WGJ9 1857 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 CDC42EP2O14613 210 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 CT62P0C5K7 136 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 HMGA2P52926 109 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 MEF2BQ02080 365 aaPredicted RBP9□□□□□ -0.97
PCDH9-204ENST00000544246 CBLN3Q6UW01 205 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 GDF15Q99988 308 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 CBLN4Q9NTU7 201 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 ARFGEF1Q9Y6D6 1849 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 CXorf65A6NEN9 183 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 VSIG8P0DPA2 414 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 ATOH7Q8N100 152 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 MYEOVQ96EZ4 313 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 RASL10BQ96S79 203 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 MGST3O14880 152 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 RND2P52198 227 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 MIC13Q5XKP0 118 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 FBXW9Q5XUX1 488 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 QTRT1Q9BXR0 403 aaKnown RBP9□□□□□ -0.97
PCDH9-204ENST00000544246 MYH9P35579 1960 aaKnown RBP9□□□□□ -0.97
PCDH9-204ENST00000544246 C21orf140B9A014 251 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 TUBA4BQ9H853 241 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 DNAJC4Q9NNZ3 241 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 TMEM106BQ9NUM4 274 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 CA1P00915 261 aaPredicted RBP9□□□□□ -0.97
PCDH9-204ENST00000544246 TDGF1P13385 188 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 PGFP49763 221 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 LCN2P80188 198 aa9□□□□□ -0.97
PCDH9-204ENST00000544246 COL4A5P29400 1685 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 LIPFP07098 398 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 KLK2P20151 261 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 CHODLQ9H9P2 273 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 NXT2Q9NPJ8 142 aaKnown RBP8.99□□□□□ -0.97
PCDH9-204ENST00000544246 R4GN57 208 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 CDK5RAP2Q96SN8 1893 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 C19orf67A6NJJ6 358 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 ARL14EPLP0DKL9 152 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 AGAP20933 346 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 MGAT2Q10469 447 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 C1orf210Q8IVY1 113 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 OR2Y1Q8NGV0 311 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 FOXJ2Q9P0K8 574 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 ZNF831Q5JPB2 1677 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 IFNL4K9M1U5 179 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 FTH1P19P0C7X4 201 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 C8orf88P0DMB2 117 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 OR2K2Q8NGT1 345 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 SPSB4Q96A44 273 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 ZNF488Q96MN9 340 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 IDI2-AS1Q9NZ38 188 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 NPPCP23582 126 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 SAMD13Q5VXD3 122 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 KIR3DL3Q8N743 410 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 TGFAP01135 160 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 EFNB2P52799 333 aa8.99□□□□□ -0.97
PCDH9-204ENST00000544246 NUTF2P61970 127 aaKnown RBP8.99□□□□□ -0.97
PCDH9-204ENST00000544246 MRPL32Q9BYC8 188 aaKnown RBP8.99□□□□□ -0.97
PCDH9-204ENST00000544246 C9JCJ5 164 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 BGLAPP02818 100 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 MALP21145 153 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 ZFP36L2P47974 494 aaKnown RBP8.98□□□□□ -0.97
PCDH9-204ENST00000544246 HBBP68871 147 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 SIGLEC14Q08ET2 396 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 CXorf66Q5JRM2 361 aaPredicted RBP8.98□□□□□ -0.97
PCDH9-204ENST00000544246 TYMSP04818 313 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 RPS11P62280 158 aaKnown RBP eCLIP8.98□□□□□ -0.97
PCDH9-204ENST00000544246 TOMM7Q9P0U1 55 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 SRSF5Q13243 272 aaKnown RBP8.98□□□□□ -0.97
PCDH9-204ENST00000544246 OR5AN1Q8NGI8 311 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 TAF15Q92804 592 aaKnown RBP eCLIP8.98□□□□□ -0.97
PCDH9-204ENST00000544246 ASIPP42127 132 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 CEACAM21Q3KPI0 293 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 UNQ9370/PRO34162Q6UXP9 181 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 LINC01555Q8NAE3 123 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 SCGB3A1Q96QR1 104 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 MIXL1Q9H2W2 232 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 TRAV8-2A0A0B4J237 113 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 C7orf66A4D0T2 115 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 SYNGR3O43761 229 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 CDK2AP2O75956 126 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 FCARP24071 287 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 ZIC1Q15915 447 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 LY6EQ16553 131 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 CENPVQ7Z7K6 275 aaPredicted RBP8.98□□□□□ -0.97
PCDH9-204ENST00000544246 RNASEH2CQ8TDP1 164 aaKnown RBP8.98□□□□□ -0.97
PCDH9-204ENST00000544246 DMRT1Q9Y5R6 373 aa8.98□□□□□ -0.97
PCDH9-204ENST00000544246 FOXI3A8MTJ6 420 aaPredicted RBP8.97□□□□□ -0.97
PCDH9-204ENST00000544246 LDLRAD4O15165 306 aa8.97□□□□□ -0.97
PCDH9-204ENST00000544246 Q5PR19 223 aa8.97□□□□□ -0.97
PCDH9-204ENST00000544246 FLRT3Q9NZU0 649 aa8.97□□□□□ -0.97
PCDH9-204ENST00000544246 ST6GALNAC2Q9UJ37 374 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms