RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 RPL39P5Q59GN2 51 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 TMEM14EPQ6UXP3 125 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 TMEM182Q6ZP80 229 aaPredicted RBP11.69□□□□□ -0.54
LDB3-207ENST00000542786 STX12Q86Y82 276 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 LRRC46Q96FV0 321 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 PLPPR2Q96GM1 343 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 NARS2Q96I59 477 aaKnown RBP11.69□□□□□ -0.54
LDB3-207ENST00000542786 COQ3Q9NZJ6 369 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 LAMP3Q9UQV4 416 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 SPTBN4Q9H254 2564 aa11.69□□□□□ -0.54
LDB3-207ENST00000542786 TRGV10A0A0A0MS01 117 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 RNASEK-C17orf49H0YIS7 233 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 MMP23AO75900 390 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 IRF2P14316 349 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 PLA2G5P39877 138 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 ARHGDIBP52566 201 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 RUNX1Q01196 453 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 GUCA2BQ16661 112 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 COMMD1Q8N668 190 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 CD300LFQ8TDQ1 290 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 OR4C12Q96R67 309 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 ABHD14AQ9BUJ0 271 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.68□□□□□ -0.54
LDB3-207ENST00000542786 TMA7Q9Y2S6 64 aaKnown RBP11.68□□□□□ -0.54
LDB3-207ENST00000542786 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.68□□□□□ -0.54
LDB3-207ENST00000542786 ZNF729A6NN14 1252 aaPredicted RBP11.68□□□□□ -0.54
LDB3-207ENST00000542786 M0R1X1 148 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 SIAH2O43255 324 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 DFFBO76075 338 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 METTL15P1P0C7V9 234 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 SNCAP37840 140 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 CAMLGP49069 296 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 ADORA2A-AS1P86434 159 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 BTN1A1Q13410 526 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 TMEM30BQ3MIR4 351 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.68□□□□□ -0.54
LDB3-207ENST00000542786 OR2G3Q8NGZ4 309 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 LEAP2Q969E1 77 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 GNPNAT1Q96EK6 184 aaPredicted RBP11.68□□□□□ -0.54
LDB3-207ENST00000542786 HIPK2Q9H2X6 1198 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 RAB9BQ9NP90 201 aa11.68□□□□□ -0.54
LDB3-207ENST00000542786 UMAD1C9J7I0 102 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 AGPAT2O15120 278 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 IGHV3-7P01780 117 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 GRNP28799 593 aaKnown RBP11.67□□□□□ -0.54
LDB3-207ENST00000542786 CHRNB4P30926 498 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 RAB7AP51149 207 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 CASP6P55212 293 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 CDSNQ15517 529 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 R3HDM4Q96D70 268 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 SEC11CQ9BY50 192 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 EGLN1Q9GZT9 426 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 SAP30LQ9HAJ7 183 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 TREM1Q9NP99 234 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 IDI2-AS1Q9NZ38 188 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 ROS1P08922 2347 aa11.67□□□□□ -0.54
LDB3-207ENST00000542786 SPTA1P02549 2419 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 TRAV38-1A0A0B4J264 116 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 MARCH11A6NNE9 402 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 FAM90A9PA6NNJ1 464 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 PMS2P5A8MQ11 134 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 DNASE2O00115 360 aaPredicted RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 PLAUP00749 431 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 OR9G9P0C7N8 305 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 LOXP28300 417 aaPredicted RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 DVL1P1P54792 670 aaPredicted RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 SPSB3Q6PJ21 355 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 PUSL1Q8N0Z8 303 aaKnown RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 FAM213BQ8TBF2 198 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 FAM122AQ96E09 287 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 PARD6GQ9BYG4 376 aaPredicted RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 TMEM106BQ9NUM4 274 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 RPUSD1Q9UJJ7 312 aaKnown RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 LINC00312Q9Y6C7 94 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 SAA2-SAA4A0A096LPE2 208 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 MED19A0JLT2 244 aaPredicted RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 NKX6-3A6NJ46 265 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 FAM90A27PA6NNH2 459 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 CCL21O00585 134 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 TSPAN15O95858 294 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 HPRT1P00492 218 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 SAA2P0DJI9 122 aaPredicted RBP11.66□□□□□ -0.54
LDB3-207ENST00000542786 DEFA5Q01523 94 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 ZNF616Q08AN1 781 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 ZNF273Q14593 569 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 H2BFWTQ7Z2G1 175 aa11.66□□□□□ -0.54
LDB3-207ENST00000542786 PPIAL4EA0A075B759 164 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 A0A1B0GW64 132 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 A0A1W2PPE3 182 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 VSTM5A8MXK1 200 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 PPIAL4DF5H284 164 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 FCGR3BO75015 233 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 PRH1P02810 166 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 CD3EP07766 207 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 OR8U8P0C7N1 319 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 C1QTNF9P0C862 333 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 PPIAL4FP0DN26 164 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 APOBEC3AP31941 199 aaPredicted RBP11.65□□□□□ -0.54
LDB3-207ENST00000542786 KIR2DS2P43631 304 aa11.65□□□□□ -0.54
LDB3-207ENST00000542786 MEF2CQ06413 473 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms