RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 OR13A1Q8NGR1 328 aa11.01□□□□□ -0.65
LDLR-203ENST00000535915 OPN3Q9H1Y3 402 aaPredicted RBP11.01□□□□□ -0.65
LDLR-203ENST00000535915 PLSCR4Q9NRQ2 329 aa11.01□□□□□ -0.65
LDLR-203ENST00000535915 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.01□□□□□ -0.65
LDLR-203ENST00000535915 CISD1Q9NZ45 108 aaKnown RBP11.01□□□□□ -0.65
LDLR-203ENST00000535915 URGCP-MRPS24S4R325 110 aa11.01□□□□□ -0.65
LDLR-203ENST00000535915 DEFB108AA8MXU0 73 aa11□□□□□ -0.65
LDLR-203ENST00000535915 ACSF3Q4G176 576 aaPredicted RBP11□□□□□ -0.65
LDLR-203ENST00000535915 ZNF343Q6P1L6 599 aa11□□□□□ -0.65
LDLR-203ENST00000535915 REC114Q7Z4M0 266 aa11□□□□□ -0.65
LDLR-203ENST00000535915 OR10G4Q8NGN3 311 aa11□□□□□ -0.65
LDLR-203ENST00000535915 PINX1Q96BK5 328 aaKnown RBP11□□□□□ -0.65
LDLR-203ENST00000535915 PARD6GQ9BYG4 376 aaPredicted RBP11□□□□□ -0.65
LDLR-203ENST00000535915 IGHV2OR16-5A0A0B4J2B6 119 aa11□□□□□ -0.65
LDLR-203ENST00000535915 IGHV1-18A0A0C4DH31 117 aa11□□□□□ -0.65
LDLR-203ENST00000535915 IFNL4K9M1U5 179 aa11□□□□□ -0.65
LDLR-203ENST00000535915 RBMXL2O75526 392 aaKnown RBP11□□□□□ -0.65
LDLR-203ENST00000535915 TUBG1P23258 451 aa11□□□□□ -0.65
LDLR-203ENST00000535915 CDX1P47902 265 aaPredicted RBP11□□□□□ -0.65
LDLR-203ENST00000535915 BRWD1-AS2P59051 145 aa11□□□□□ -0.65
LDLR-203ENST00000535915 LRRC29Q8WV35 223 aa11□□□□□ -0.65
LDLR-203ENST00000535915 TMEM68Q96MH6 324 aa11□□□□□ -0.65
LDLR-203ENST00000535915 TUBG2Q9NRH3 451 aa11□□□□□ -0.65
LDLR-203ENST00000535915 PROCRQ9UNN8 238 aa11□□□□□ -0.65
LDLR-203ENST00000535915 CNOT1A5YKK6 2376 aaKnown RBP11□□□□□ -0.65
LDLR-203ENST00000535915 OTOGLQ3ZCN5 2332 aa11□□□□□ -0.65
LDLR-203ENST00000535915 MAP1LC3B2A6NCE7 125 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 CD55P08174 381 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 P0C879 139 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 HOXA5P20719 270 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 NDUFA6P56556 154 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 EDDM3AQ14507 147 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 ELOBQ15370 118 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 LTC4SQ16873 150 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 DEFB109BQ30KR1 87 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 FAM90A2PQ658T7 463 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 ALKBH2Q6NS38 261 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 H2BFWTQ7Z2G1 175 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 C1QL4Q86Z23 238 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 MAP1LC3BQ9GZQ8 125 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 PRDM13Q9H4Q3 707 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 PSG11Q9UQ72 335 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 A0A087X0M5 115 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 A0A1B0GX30 115 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 IGLV1-44P01699 117 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 DDTP30046 118 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 CASP6P55212 293 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 LINC00205P59089 165 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 CD177Q8N6Q3 437 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 OR2Z1Q8NG97 314 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 Q8WTZ3 238 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 ZDHHC16Q969W1 377 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 DCTN5Q9BTE1 182 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 TTC28Q96AY4 2481 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 LINC00473A8K010 186 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 CEBPZOSA8MTT3 80 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 TSTD3H0UI37 97 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 SPINT2O43291 252 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 ZG16O60844 167 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 CLDN14O95500 239 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 HIST1H1BP16401 226 aaKnown RBP10.99□□□□□ -0.65
LDLR-203ENST00000535915 USF2Q15853 346 aaPredicted RBP10.99□□□□□ -0.65
LDLR-203ENST00000535915 MBNL2Q5VZF2 373 aaKnown RBP10.99□□□□□ -0.65
LDLR-203ENST00000535915 BHLHA15Q7RTS1 189 aaPredicted RBP10.99□□□□□ -0.65
LDLR-203ENST00000535915 OR10D4PQ8NGN7 298 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 DTD1Q8TEA8 209 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 CA5BP1Q8WTZ4 195 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 ZNF71Q9NQZ8 489 aaPredicted RBP10.99□□□□□ -0.65
LDLR-203ENST00000535915 SIRT7Q9NRC8 400 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 SLC39A9Q9NUM3 307 aa10.99□□□□□ -0.65
LDLR-203ENST00000535915 LAMA5O15230 3695 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 CADP27708 2225 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 ZNF891A8MT65 544 aaPredicted RBP10.98□□□□□ -0.65
LDLR-203ENST00000535915 AHRRA9YTQ3 701 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 TNFSF13O75888 250 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 CXCL1P09341 107 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 RPS16P62249 146 aaKnown RBP10.98□□□□□ -0.65
LDLR-203ENST00000535915 MRGPRGQ86SM5 289 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 LHX4Q969G2 390 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 STARD4Q96DR4 205 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 TAAR6Q96RI8 345 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 DKK4Q9UBT3 224 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 DUSP13Q9UII6 198 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 VAX2Q9UIW0 290 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 RAB29O14966 203 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 IFNA1P01562 189 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 PRDX2P32119 198 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 ERVFRD-1P60508 538 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 RELQ04864 619 aaPredicted RBP10.98□□□□□ -0.65
LDLR-203ENST00000535915 SPINK9Q5DT21 86 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 ZNF66Q6ZN08 573 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 RPP25LQ8N5L8 163 aaKnown RBP10.98□□□□□ -0.65
LDLR-203ENST00000535915 TCTEX1D1Q8N7M0 179 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 OR10P1Q8NGE3 313 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 P2RX4Q99571 388 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 HSD17B10Q99714 261 aaKnown RBP10.98□□□□□ -0.65
LDLR-203ENST00000535915 PRO1933Q9H354 126 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 PARD6AQ9NPB6 346 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 WASF3Q9UPY6 502 aa10.98□□□□□ -0.65
LDLR-203ENST00000535915 LAMP3Q9UQV4 416 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms