RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 A0A1W2PRX2 142 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 PSMB11A5LHX3 300 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 AP4M1O00189 453 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 ITGB1BP1O14713 200 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 MPPED1O15442 326 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 NBR2O15453 112 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 CHST1O43916 411 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 HPGDSO60760 199 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 RBBP9O75884 186 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 OR5H8P0DN80 308 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 NFYAP23511 347 aaPredicted RBP6.43□□□□□ -1.38
USP40-216ENST00000485943 RCVRNP35243 200 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 ACTBP60709 375 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 DIAPH2-AS1Q14236 149 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 KIR3DS1Q14943 382 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 SRSF7Q16629 238 aaKnown RBP eCLIP6.43□□□□□ -1.38
USP40-216ENST00000485943 VMA21Q3ZAQ7 101 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 ZNF260Q3ZCT1 412 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 RPL39P5Q59GN2 51 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 LY6G6FQ5SQ64 297 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 ZNF880Q6PDB4 577 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 GLDNQ6ZMI3 551 aaPredicted RBP6.43□□□□□ -1.38
USP40-216ENST00000485943 CHPT1Q8WUD6 406 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 SECTM1Q8WVN6 248 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 TCTEX1D2Q8WW35 142 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 DIRAS2Q96HU8 199 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 ABCG5Q9H222 651 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 AUNIPQ9H7T9 357 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.43□□□□□ -1.38
USP40-216ENST00000485943 ZNF107Q9UII5 783 aaPredicted RBP6.43□□□□□ -1.38
USP40-216ENST00000485943 SIGLEC9Q9Y336 463 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 OR2W1Q9Y3N9 320 aa6.43□□□□□ -1.38
USP40-216ENST00000485943 TCRBV4S1A1TA0A5B7 111 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 SH2D7A6NKC9 451 aaPredicted RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 TRIM64CA6NLI5 447 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 LY6LH3BQJ8 138 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 AMY2AP04746 511 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 PGAM2P15259 253 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 FCGR2CP31995 323 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 ZNF134P52741 427 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 ERVK-16P61578 105 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 GNB1P62873 340 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 BLCAPP62952 87 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 TMEM267Q0VDI3 215 aaPredicted RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 HABP2Q14520 560 aaPredicted RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 CDK10Q15131 360 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 ACTBL2Q562R1 376 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 CXorf66Q5JRM2 361 aaPredicted RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 FAM53AQ6NSI3 398 aaPredicted RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 ZNF833PQ6ZTB9 187 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 KCTD9Q7L273 389 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 PDPNQ86YL7 162 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 CMTM1Q8IZ96 169 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 ZNF645Q8N7E2 425 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 DRAXINQ8NBI3 349 aaPredicted RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 ZNF439Q8NDP4 499 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 OR4F17Q8NGA8 305 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 OR5AU1Q8NGC0 362 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 OR5AP2Q8NGF4 316 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 OR6F1Q8NGZ6 308 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 FCAMRQ8WWV6 532 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 SLC25A38Q96DW6 304 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 HARBI1Q96MB7 349 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 OR4F4Q96R69 305 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 CLCC1Q96S66 551 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 NABP2Q9BQ15 211 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 AIFM2Q9BRQ8 373 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 CABLES2Q9BTV7 478 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 SLC5A7Q9GZV3 580 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 NAA50Q9GZZ1 169 aaKnown RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 IFI27L2Q9H2X8 130 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 PARP11Q9NR21 331 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 ZNF355PQ9NSJ1 428 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 LIN7CQ9NUP9 197 aaKnown RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 RABL2AQ9UBK7 228 aaPredicted RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 METTL1Q9UBP6 276 aaKnown RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 RABL2BQ9UNT1 228 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 KCNK7Q9Y2U2 307 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 ANK3Q12955 4377 aaKnown RBP6.42□□□□□ -1.38
USP40-216ENST00000485943 COL6A5A8TX70 2615 aa6.42□□□□□ -1.38
USP40-216ENST00000485943 TRBV6-7A0A0A0MS04 114 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 DPPA5A6NC42 116 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 FOXI3A8MTJ6 420 aaPredicted RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 FCGR3BO75015 233 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 PMP2P02689 132 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 EIF4EP06730 217 aaKnown RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 HLA-DMAP28067 261 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 KIR2DS2P43631 304 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 ALDH3B2P48448 385 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 ZNF137PP52743 207 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 ECSCRQ19T08 205 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 TMEM95Q3KNT9 176 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 RNASE10Q5GAN6 216 aaKnown RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 OR2B11Q5JQS5 317 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 LDLRAD2Q5SZI1 272 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 AADACL3Q5VUY0 350 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 LIN54Q6MZP7 749 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 LPCAT3Q6P1A2 487 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 CCBE1Q6UXH8 406 aaPredicted RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 Q6ZS49 121 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms