RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 OR10A3P58181 314 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 MRPS15P82914 257 aaKnown RBP16.63■□□□□ 0.25
USP40-215ENST00000484528 AKIRIN2Q53H80 203 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 IGSF11Q5DX21 431 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 PYHIN1Q6K0P9 492 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 ZNF562Q6V9R5 426 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 PDPNQ86YL7 162 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 SLC35D1Q9NTN3 355 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 SMAD5-AS1Q9Y6J3 95 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 TNCP24821 2201 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 ARPC1BO15143 372 aaKnown RBP16.62■□□□□ 0.25
USP40-215ENST00000484528 FABP7O15540 132 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 SPDEFO95238 335 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 OR8U9P0C7N5 309 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 SPNP16150 400 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 FXYD3Q14802 87 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 SSX1Q16384 188 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 OR4A4PQ8NGN8 299 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 RAB3CQ96E17 227 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 CNBD2Q96M20 576 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 OR2D2Q9H210 308 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 ACOT13Q9NPJ3 140 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 ZNF355PQ9NSJ1 428 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 RAB22AQ9UL26 194 aa16.62■□□□□ 0.25
USP40-215ENST00000484528 A0A0B4J203 849 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 SHISA3A0PJX4 238 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 TRGV3P03979 118 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 FCGR3AP08637 254 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 GSTT2P0CG29 244 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 GSTT2BP0CG30 244 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 IZUMO2Q6UXV1 221 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 HAPLN4Q86UW8 402 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 FLYWCH2Q96CP2 140 aaKnown RBP16.61■□□□□ 0.25
USP40-215ENST00000484528 C5orf30Q96GV9 206 aa16.61■□□□□ 0.25
USP40-215ENST00000484528 ZNF230Q9UIE0 474 aaPredicted RBP16.61■□□□□ 0.25
USP40-215ENST00000484528 GNB3P16520 340 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 CD40LGP29965 261 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 SSBP2P81877 361 aaPredicted RBP16.6■□□□□ 0.25
USP40-215ENST00000484528 PITPNAQ00169 270 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 PJVKQ0ZLH3 352 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 TBCEQ15813 527 aaPredicted RBP16.6■□□□□ 0.25
USP40-215ENST00000484528 ACSM6Q6P461 480 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 ZNF367Q7RTV3 350 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 OVCH2Q7RTZ1 564 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.6■□□□□ 0.25
USP40-215ENST00000484528 OR5T1Q8NG75 326 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 CABLES2Q9BTV7 478 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 SDHAF2Q9NX18 166 aa16.6■□□□□ 0.25
USP40-215ENST00000484528 CNIH1O95406 144 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 IGLV2-23P01705 113 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 HSPB1P04792 205 aaKnown RBP16.59■□□□□ 0.25
USP40-215ENST00000484528 SERPINB10P48595 397 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 PSMD7P51665 324 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 DEFA5Q01523 94 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 OR10R2Q8NGX6 335 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 OR10J5Q8NHC4 309 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 RHOVQ96L33 236 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 SLA2Q9H6Q3 261 aa16.59■□□□□ 0.25
USP40-215ENST00000484528 SMIM30A4D0T7 59 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 MFNGO00587 321 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 PDCD5O14737 125 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 GP9P14770 177 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 POC5Q8NA72 575 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 OR6Q1Q8NGQ2 317 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 HARBI1Q96MB7 349 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 OR4C12Q96R67 309 aa16.58■□□□□ 0.24
USP40-215ENST00000484528 TRBV6-7A0A0A0MS04 114 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 TRIM64CA6NLI5 447 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 IFITM5A6NNB3 132 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 RAB27BO00194 218 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 HIST1H1DP16402 221 aaKnown RBP16.57■□□□□ 0.24
USP40-215ENST00000484528 GADD45AP24522 165 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 MYL9P24844 172 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 SRSF7Q16629 238 aaKnown RBP eCLIP16.57■□□□□ 0.24
USP40-215ENST00000484528 SBSPONQ8IVN8 264 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 BVESQ8NE79 360 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 VCX3BQ9H321 246 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 NDUFB11Q9NX14 153 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 RBM7Q9Y580 266 aaKnown RBP16.57■□□□□ 0.24
USP40-215ENST00000484528 RYR3Q15413 4870 aa16.57■□□□□ 0.24
USP40-215ENST00000484528 HUWE1Q7Z6Z7 4374 aaKnown RBP16.56■□□□□ 0.24
USP40-215ENST00000484528 TRAV1-2A0A0B4J238 106 aa16.56■□□□□ 0.24
USP40-215ENST00000484528 APELAP0DMC3 54 aa16.56■□□□□ 0.24
USP40-215ENST00000484528 RANBP1P43487 201 aa16.56■□□□□ 0.24
USP40-215ENST00000484528 GINS4Q9BRT9 223 aa16.56■□□□□ 0.24
USP40-215ENST00000484528 RSRP1Q9BUV0 290 aa16.56■□□□□ 0.24
USP40-215ENST00000484528 ELF5Q9UKW6 265 aaPredicted RBP16.56■□□□□ 0.24
USP40-215ENST00000484528 C13orf42A0A1B0GVH6 325 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 ANKRD34BA5PLL1 514 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 SHOXO15266 292 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 CRYGBP07316 175 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 FRMD6-AS1P0C7T7 363 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 RAB3BP20337 219 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 ARFRP1Q13795 201 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 C22orf42Q6IC83 251 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 BLOC1S6Q9UL45 172 aa16.55■□□□□ 0.24
USP40-215ENST00000484528 IGKV1D-8A0A087WSZ0 117 aa16.54■□□□□ 0.24
USP40-215ENST00000484528 SRRM4A7MD48 611 aaKnown RBP16.54■□□□□ 0.24
USP40-215ENST00000484528 RAB6AP20340 208 aa16.54■□□□□ 0.24
USP40-215ENST00000484528 LGALS7P47929 136 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms