RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 S100GP29377 79 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 RAB13P51153 203 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 RND3P61587 244 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 MOB3BQ86TA1 216 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 PDPNQ86YL7 162 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 ZNF383Q8NA42 475 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 OCEL1Q9H607 264 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 PALMDQ9NP74 551 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 PITPNC1Q9UKF7 332 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 TCF19Q9Y242 345 aa12.2□□□□□ -0.46
NPHP4-205ENST00000466897 HOXA3O43365 443 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-205ENST00000466897 IGHV4-59P01825 116 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 APOA2P02652 100 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 CTSDP07339 412 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-205ENST00000466897 RRASP10301 218 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 PAX6P26367 422 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 BTCP35070 178 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 IFITM3Q01628 133 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 BAMBIQ13145 260 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 CATR1Q13166 79 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 RBMS2Q15434 407 aaKnown RBP12.19□□□□□ -0.46
NPHP4-205ENST00000466897 KCTD9Q7L273 389 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 C16orf82Q7Z2V1 217 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 TCTEX1D1Q8N7M0 179 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 ZDHHC22Q8N966 263 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 MARCH1Q8TCQ1 289 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 SLC2A9Q9NRM0 540 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 FAM212BQ9NTI7 297 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-205ENST00000466897 VPREB3Q9UKI3 123 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 TBC1D24Q9ULP9 559 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 GPR132Q9UNW8 380 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 WASHC3Q9Y3C0 194 aa12.19□□□□□ -0.46
NPHP4-205ENST00000466897 CUBNO60494 3623 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 DNAJC9-AS1A6NH13 148 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 LINC00473A8K010 186 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 RNF212BA8MTL3 300 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 TCF21O43680 179 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 PGLYRP1O75594 196 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-205ENST00000466897 IFNA2P01563 188 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 SNRNP70P08621 437 aaKnown RBP12.18□□□□□ -0.46
NPHP4-205ENST00000466897 PGAM2P15259 253 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 KIR2DS2P43631 304 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 RPL15P61313 204 aaKnown RBP12.18□□□□□ -0.46
NPHP4-205ENST00000466897 SLC9A3R2Q15599 337 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 DHRS7BQ6IAN0 325 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-205ENST00000466897 Q8N6K4 173 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 OR2T10Q8NGZ9 312 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 RNF5Q99942 180 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 ESM1Q9NQ30 184 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 PRELID3BQ9Y3B1 194 aa12.18□□□□□ -0.46
NPHP4-205ENST00000466897 NIPBLQ6KC79 2804 aaeCLIP12.18□□□□□ -0.46
NPHP4-205ENST00000466897 A6NDX4 124 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 RBFOX2O43251 390 aaKnown RBP eCLIP12.17□□□□□ -0.46
NPHP4-205ENST00000466897 NDUFB6O95139 128 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 MOSP00540 346 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 IGKV1D-33P01593 117 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 IGKV1-33P01594 117 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 SLC6A1P30531 599 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 DEFA1P59665 94 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 DEFA3P59666 94 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 RTL8BQ17RB0 113 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 MZT2BQ6NZ67 158 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 CCDC71LQ8N9Z2 235 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 DRAXINQ8NBI3 349 aaPredicted RBP12.17□□□□□ -0.46
NPHP4-205ENST00000466897 OR8H1Q8NGG4 311 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 CAPSLQ8WWF8 208 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 C5orf66Q9H5L9 145 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 RAB18Q9NP72 206 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 SLC35D1Q9NTN3 355 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 COPZ2Q9P299 210 aa12.17□□□□□ -0.46
NPHP4-205ENST00000466897 C14orf166Q9Y224 244 aaKnown RBP12.17□□□□□ -0.46
NPHP4-205ENST00000466897 IGHV3-72A0A0B4J1Y9 119 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 LINC00854A0A1B0GVQ3 168 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 B3GALNT1O75752 331 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 RNASE1P07998 156 aaKnown RBP12.16□□□□□ -0.46
NPHP4-205ENST00000466897 F2RP25116 425 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 PIGPP57054 158 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 RPL30P62888 115 aaKnown RBP12.16□□□□□ -0.46
NPHP4-205ENST00000466897 CBX3Q13185 183 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 ABCA11PQ4W5N1 156 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 PHLDA2Q53GA4 152 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 C16orf87Q6PH81 154 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 GLDNQ6ZMI3 551 aaPredicted RBP12.16□□□□□ -0.46
NPHP4-205ENST00000466897 OR4C13Q8NGP0 309 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 CD300LFQ8TDQ1 290 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 TCTEX1D2Q8WW35 142 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 EAF1Q96JC9 268 aaPredicted RBP12.16□□□□□ -0.46
NPHP4-205ENST00000466897 RBM14Q96PK6 669 aaKnown RBP12.16□□□□□ -0.46
NPHP4-205ENST00000466897 RTBDNQ9BSG5 229 aaPredicted RBP12.16□□□□□ -0.46
NPHP4-205ENST00000466897 LIN7CQ9NUP9 197 aaKnown RBP12.16□□□□□ -0.46
NPHP4-205ENST00000466897 VSIG4Q9Y279 399 aa12.16□□□□□ -0.46
NPHP4-205ENST00000466897 MPPED1O15442 326 aa12.15□□□□□ -0.46
NPHP4-205ENST00000466897 TNFSF12O43508 249 aa12.15□□□□□ -0.46
NPHP4-205ENST00000466897 OR2F2O95006 317 aa12.15□□□□□ -0.46
NPHP4-205ENST00000466897 RLN1P04808 185 aa12.15□□□□□ -0.46
NPHP4-205ENST00000466897 TMEM11P17152 192 aa12.15□□□□□ -0.46
NPHP4-205ENST00000466897 CCR6P51684 374 aa12.15□□□□□ -0.46
NPHP4-205ENST00000466897 LINC00205P59089 165 aa12.15□□□□□ -0.46
NPHP4-205ENST00000466897 UBA52P62987 128 aaKnown RBP12.15□□□□□ -0.46
NPHP4-205ENST00000466897 TMEM177Q53S58 311 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms