RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 OR5AU1Q8NGC0 362 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 SGMS2Q8NHU3 365 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 ABHD1Q96SE0 405 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 DCUN1D5Q9BTE7 237 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 FBXL15Q9H469 300 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 SCPEP1Q9HB40 452 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 SLC35D1Q9NTN3 355 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 EHFQ9NZC4 300 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 RSL24D1Q9UHA3 163 aaKnown RBP10.56□□□□□ -0.72
VPS28-202ENST00000377348 ZNF107Q9UII5 783 aaPredicted RBP10.56□□□□□ -0.72
VPS28-202ENST00000377348 ADAM30Q9UKF2 790 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 FBXO24O75426 580 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 NDUFA3O95167 84 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 PPYP01298 95 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 THBS3P49746 956 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 FXYD4P59646 89 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 RPS16P62249 146 aaKnown RBP10.55□□□□□ -0.72
VPS28-202ENST00000377348 C5orf64Q2M2E5 130 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 ZNF329Q86UD4 541 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 PDPNQ86YL7 162 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 BVESQ8NE79 360 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 OR5H2Q8NGV7 314 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 OR52I2Q8NH67 350 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 SECTM1Q8WVN6 248 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 GPHA2Q96T91 129 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 CITED2Q99967 270 aaPredicted RBP10.55□□□□□ -0.72
VPS28-202ENST00000377348 KIAA1456Q9P272 454 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 RBMX2Q9Y388 322 aaKnown RBP10.55□□□□□ -0.72
VPS28-202ENST00000377348 WNK1Q9H4A3 2382 aa10.55□□□□□ -0.72
VPS28-202ENST00000377348 SULT1C2O00338 296 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 RRHO14718 337 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 RBBP9O75884 186 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 HRH1P35367 487 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 TAS2R46P59540 309 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 RPL30P62888 115 aaKnown RBP10.54□□□□□ -0.72
VPS28-202ENST00000377348 NSUN5P1Q3KNT7 163 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 TCTEX1D4Q5JR98 221 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 OVCH2Q7RTZ1 564 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 TMEM17Q86X19 198 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 FOXRED2Q8IWF2 684 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 STPG2Q8N412 459 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 GIMAP1Q8WWP7 306 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 DDB2Q92466 427 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 FLYWCH2Q96CP2 140 aaKnown RBP10.54□□□□□ -0.72
VPS28-202ENST00000377348 DIRAS2Q96HU8 199 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 CLCC1Q96S66 551 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 CCL28Q9NRJ3 127 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 TPSG1Q9NRR2 321 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 TAS2R8Q9NYW2 309 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 KLK11Q9UBX7 282 aa10.54□□□□□ -0.72
VPS28-202ENST00000377348 IGHV7-81A0A0B4J1V7 117 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 PSMB11A5LHX3 300 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 AP4M1O00189 453 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 FCN1O00602 326 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 TNFSF12O43508 249 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 TSPAN15O95858 294 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 HLA-DRB1P01911 266 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 RCVRNP35243 200 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 DGCR2P98153 550 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 NDPQ00604 133 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 EIF4EBP1Q13541 118 aaPredicted RBP10.53□□□□□ -0.72
VPS28-202ENST00000377348 DYRK1AQ13627 763 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 PLGLAQ15195 96 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 PSG5Q15238 335 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 OR2B11Q5JQS5 317 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 PRR31Q5SQ13 230 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 ZNF660Q6AZW8 331 aaPredicted RBP10.53□□□□□ -0.72
VPS28-202ENST00000377348 LIN54Q6MZP7 749 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 KCTD9Q7L273 389 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 MCFD2Q8NI22 146 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 ZNF2Q9BSG1 426 aaPredicted RBP10.53□□□□□ -0.72
VPS28-202ENST00000377348 SLC5A7Q9GZV3 580 aa10.53□□□□□ -0.72
VPS28-202ENST00000377348 NXF2Q9GZY0 626 aaKnown RBP10.53□□□□□ -0.72
VPS28-202ENST00000377348 METTL1Q9UBP6 276 aaKnown RBP10.53□□□□□ -0.72
VPS28-202ENST00000377348 TET2Q6N021 2002 aaPredicted RBP10.52□□□□□ -0.73
VPS28-202ENST00000377348 A0A1W2PRX2 142 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 SRRM4A7MD48 611 aaKnown RBP10.52□□□□□ -0.73
VPS28-202ENST00000377348 M0QYG6 137 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 M0QZ24 198 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 KCNAB3O43448 404 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 SLC25A17O43808 307 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 FCGR3BO75015 233 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 SLC22A5O76082 557 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 CRYZL1O95825 349 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 IGLV2-23P01705 113 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 HERV-K104P61576 105 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 CD83Q01151 205 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 IL18Q14116 193 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 RTL8BQ17RB0 113 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 TMEM177Q53S58 311 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 DHRS11Q6UWP2 260 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 ZNF818PQ6ZRF7 136 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 MFSD4AQ8N468 514 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 CHPT1Q8WUD6 406 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 ADTRPQ96IZ2 230 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 HARBI1Q96MB7 349 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 TSNAXQ99598 290 aaKnown RBP10.52□□□□□ -0.73
VPS28-202ENST00000377348 RNF5Q99942 180 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 FXYD6Q9H0Q3 95 aa10.52□□□□□ -0.73
VPS28-202ENST00000377348 PARP11Q9NR21 331 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms