RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RAB7AP51149 207 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 AKR1C2P52895 323 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 KRTAP10-9P60411 292 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CATR1Q13166 79 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 OPCMLQ14982 345 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 MSMO1Q15800 293 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 PRSS54Q6PEW0 395 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 TMEM65Q6PI78 240 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ZNF66Q6ZN08 573 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 TMUB2Q71RG4 321 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 VKORC1L1Q8N0U8 176 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 FAM71E2Q8N5Q1 922 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ZNF383Q8NA42 475 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CLEC18CQ8NCF0 446 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 RNASE11Q8TAA1 199 aaKnown RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 IL22RA2Q969J5 263 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 HSD17B10Q99714 261 aaKnown RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 SSBP3Q9BWW4 388 aaPredicted RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 KRTAP4-7Q9BYR0 210 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ARL6Q9H0F7 186 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 MAGT1Q9H0U3 335 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CACNG5Q9UF02 275 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 USP9YO00507 2555 aaPredicted RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 FBN2P35556 2912 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 DOPEY2Q9Y3R5 2298 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 KIAA1324LA8MWY0 1029 aaPredicted RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 J3QR06 171 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 RAB29O14966 203 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 DEDDO75618 318 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 B3GALNT1O75752 331 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CFDP00746 253 aaPredicted RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 LYL1P12980 280 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 COX7A1P24310 79 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ARF6P62330 175 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 POLR2GP62487 172 aaKnown RBP eCLIP3.38□□□□□ -1.87
MCF2-201ENST00000338585 TMEM30BQ3MIR4 351 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 HIST2H2BCQ6DN03 193 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CLEC9AQ6UXN8 241 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ABHD12Q8N2K0 398 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 LY6G5BQ8NDX9 201 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 DMBX1Q8NFW5 382 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 OR10A7Q8NGE5 316 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CLDND2Q8NHS1 167 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 C8orf46Q8TAG6 207 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 DDB2Q92466 427 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 PERPQ96FX8 193 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 MRPL20Q9BYC9 149 aaKnown RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 TMEM133Q9H2Q1 129 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ONECUT1Q9UBC0 465 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 RCL1Q9Y2P8 373 aaKnown RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 POLQO75417 2590 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 LOC105371242A0A075B767 164 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 DUXBA0A1W2PPF3 345 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 ST8SIA3O43173 380 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 SSSCA1O60232 199 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 PITX3O75364 302 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 TMEM50AO95807 157 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 IGHV2-5P01817 119 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 LIPFP07098 398 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 P0C879 139 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 CT45A6P0DMU7 189 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 CT45A5P0DMU8 189 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 CT45A7P0DMV0 189 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 S100A11P31949 105 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 NKX2-1P43699 371 aaPredicted RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 ATP5J2P56134 94 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 LMO4P61968 165 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 LCN2P80188 198 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 ESCO2Q56NI9 601 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 THOC7Q6I9Y2 204 aaKnown RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 SSX9Q7RTT3 188 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 KCNRGQ8N5I3 272 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 Q8N7P7 452 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 OR8H1Q8NGG4 311 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 BSCL2Q96G97 398 aaPredicted RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 S1PR3Q99500 378 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 SIRT7Q9NRC8 400 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 MMP26Q9NRE1 261 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 GAB2Q9UQC2 676 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 NSG2Q9Y328 171 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 POMT1Q9Y6A1 747 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 SESN1Q9Y6P5 492 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 PTPN13Q12923 2485 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 TACC2O95359 2948 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 ASH1LQ9NR48 2969 aaKnown RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 WNK2Q9Y3S1 2297 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 A0A087X0M5 115 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 IGHV2-26A0A0B4J1V2 119 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 A0A1B0GU03 582 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 A0A1B0GX30 115 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 MARCH11A6NNE9 402 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 J3QKU1 62 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 RGS13O14921 159 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 CRYZL1O95825 349 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 IGKV1-16P04430 117 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 HKR1P10072 659 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 PDLIM4P50479 330 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 ID3Q02535 119 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 KLRD1Q13241 179 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 SMCO1Q147U7 214 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms