RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 GNB1P62873 340 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 PITPNAQ00169 270 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 NDPQ00604 133 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 ZNF260Q3ZCT1 412 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 PDPNQ86YL7 162 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 LINC00482Q8N8I6 264 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.58□□□□□ -0.4
HDDC2-201ENST00000318787 CASTOR1Q8WTX7 329 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 RCC1LQ96I51 464 aaKnown RBP12.58□□□□□ -0.4
HDDC2-201ENST00000318787 TSNAXQ99598 290 aaKnown RBP12.58□□□□□ -0.4
HDDC2-201ENST00000318787 NOTCH3Q9UM47 2321 aa12.58□□□□□ -0.4
HDDC2-201ENST00000318787 CCL24O00175 119 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 FCN1O00602 326 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 CA2P00918 260 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 HOXD3P31249 432 aaPredicted RBP12.57□□□□□ -0.4
HDDC2-201ENST00000318787 CX3CL1P78423 397 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 CFHR3Q02985 330 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 PSG5Q15238 335 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 H1FOOQ8IZA3 346 aaPredicted RBP12.57□□□□□ -0.4
HDDC2-201ENST00000318787 BVESQ8NE79 360 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 WFDC9Q8NEX5 89 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 MRAPQ8TCY5 172 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 SLC25A38Q96DW6 304 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 RAX2Q96IS3 184 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.57□□□□□ -0.4
HDDC2-201ENST00000318787 TPSG1Q9NRR2 321 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 NECAP2Q9NVZ3 263 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 GAB2Q9UQC2 676 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 FBXO7Q9Y3I1 522 aa12.57□□□□□ -0.4
HDDC2-201ENST00000318787 SSX5O60225 188 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 PSMB8P28062 276 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 SLC6A1P30531 599 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 MYCNOSP40205 109 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 ARPC4P59998 168 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 RTL8BQ17RB0 113 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 KPRPQ5T749 579 aaPredicted RBP12.56□□□□□ -0.4
HDDC2-201ENST00000318787 GRPEL2Q8TAA5 225 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 DPF1Q92782 380 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 YIPF6Q96EC8 236 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 C5orf30Q96GV9 206 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 HARBI1Q96MB7 349 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 TOLLIPQ9H0E2 274 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 KLK15Q9H2R5 256 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 DIABLOQ9NR28 239 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 MEIS3P1A6NDR6 274 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 SHOXO15266 292 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 CNIH1O95406 144 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 DIRAS3O95661 229 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 PTHLHP12272 177 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 CDX1P47902 265 aaPredicted RBP12.56□□□□□ -0.4
HDDC2-201ENST00000318787 LUMP51884 338 aaPredicted RBP12.56□□□□□ -0.4
HDDC2-201ENST00000318787 SCAND1P57086 179 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 SRSF7Q16629 238 aaKnown RBP eCLIP12.56□□□□□ -0.4
HDDC2-201ENST00000318787 OR2B11Q5JQS5 317 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 ZNF660Q6AZW8 331 aaPredicted RBP12.56□□□□□ -0.4
HDDC2-201ENST00000318787 UNQ5815/PRO19632Q6UWF5 114 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 Q6ZS49 121 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 PPP1R27Q86WC6 154 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 RNF5Q99942 180 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 DCSTAMPQ9H295 470 aa12.56□□□□□ -0.4
HDDC2-201ENST00000318787 AURKAIP1Q9NWT8 199 aaPredicted RBP12.56□□□□□ -0.4
HDDC2-201ENST00000318787 TUSC2O75896 110 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 DUS4LO95620 317 aaKnown RBP12.55□□□□□ -0.4
HDDC2-201ENST00000318787 CTXN2P0C2S0 81 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 PPIFP30405 207 aaKnown RBP12.55□□□□□ -0.4
HDDC2-201ENST00000318787 RPS19P39019 145 aaKnown RBP12.55□□□□□ -0.4
HDDC2-201ENST00000318787 CNIH2Q6PI25 160 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 GVQW1Q8N7I0 195 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 C4orf3Q8WVX3 66 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 ARPC1AQ92747 370 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 DCUN1D5Q9BTE7 237 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 GNB4Q9HAV0 340 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 ZNF355PQ9NSJ1 428 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 ANXA10Q9UJ72 324 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 SPATA2Q9UM82 520 aa12.55□□□□□ -0.4
HDDC2-201ENST00000318787 FOXA2Q9Y261 457 aaPredicted RBP12.55□□□□□ -0.4
HDDC2-201ENST00000318787 SPDEFO95238 335 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 CRYZL1O95825 349 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 TMEM267Q0VDI3 215 aaPredicted RBP12.54□□□□□ -0.4
HDDC2-201ENST00000318787 FXYD3Q14802 87 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 ACTBL2Q562R1 376 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 REC114Q7Z4M0 266 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 CROCCP3Q8IVE0 287 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 ZNF645Q8N7E2 425 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 SAMD12Q8N8I0 201 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 LFNGQ8NES3 379 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 BEST4Q8NFU0 473 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 OR11H1Q8NG94 326 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 MS4A10Q96PG2 267 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 P2RX4Q99571 388 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 FUNDC2Q9BWH2 189 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 ZNF580Q9UK33 172 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 OR2W1Q9Y3N9 320 aa12.54□□□□□ -0.4
HDDC2-201ENST00000318787 LINC00473A8K010 186 aa12.53□□□□□ -0.4
HDDC2-201ENST00000318787 DUTP33316 252 aaKnown RBP12.53□□□□□ -0.4
HDDC2-201ENST00000318787 RAB9AP51151 201 aa12.53□□□□□ -0.4
HDDC2-201ENST00000318787 VBP1P61758 197 aa12.53□□□□□ -0.4
HDDC2-201ENST00000318787 NCS1P62166 190 aa12.53□□□□□ -0.4
HDDC2-201ENST00000318787 UBE2NLQ5JXB2 153 aa12.53□□□□□ -0.4
HDDC2-201ENST00000318787 KCTD9Q7L273 389 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms