RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TWIST1Q15672 202 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 MS4A10Q96PG2 267 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 CBLN4Q9NTU7 201 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 SLC25A17O43808 307 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 GPX1P07203 203 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 ZNF383Q8NA42 475 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 RAB24Q969Q5 203 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 IGLV3-21P80748 117 aaPredicted RBP17.61■□□□□ 0.41
UPF1-207ENST00000599848 CTF1Q16619 201 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 ZNF703Q9H7S9 590 aaPredicted RBP17.61■□□□□ 0.41
UPF1-207ENST00000599848 KCNK7Q9Y2U2 307 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 TMEM238LA0A1B0GVL6 79 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 A6NJY4 79 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 CSN3P07498 182 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 APELAP0DMC3 54 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 ADAT3Q96EY9 351 aaPredicted RBP17.61■□□□□ 0.41
UPF1-207ENST00000599848 DSPPQ9NZW4 1301 aa17.61■□□□□ 0.41
UPF1-207ENST00000599848 IGHV3-72A0A0B4J1Y9 119 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 ADIPOQQ15848 244 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 NEURL2Q9BR09 285 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 HSPB7Q9UBY9 170 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 NKX2-6A6NCS4 301 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 PITX3O75364 302 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.6■□□□□ 0.41
UPF1-207ENST00000599848 SMDT1Q9H4I9 107 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 VAX1Q5SQQ9 334 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 TMEM101Q96IK0 257 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 PHOX2AO14813 284 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 WNT5AP41221 380 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 HSF4Q9ULV5 492 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 ECM29Q5VYK3 1845 aa17.6■□□□□ 0.41
UPF1-207ENST00000599848 LOC390937A0A1W2PQ73 354 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 FGF8P55075 233 aaPredicted RBP17.59■□□□□ 0.41
UPF1-207ENST00000599848 C10orf128Q5T292 105 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 C20orf204Q6ZNR8 217 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 SNURFLB1AK76 121 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 FAM159AQ6UWV7 190 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 MRAP2Q96G30 205 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 TNFSF18Q9UNG2 199 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 RECKO95980 971 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 PPP1R17O96001 155 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 ISG15P05161 165 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 LDLRAD3Q86YD5 345 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 ZNF488Q96MN9 340 aa17.59■□□□□ 0.41
UPF1-207ENST00000599848 ATP1A1-AS1Q5TC04 95 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 NEU3Q9UQ49 428 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 SEC11BP0C7V7 166 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 CX3CL1P78423 397 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 ZIC4Q8N9L1 334 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 MEGF10Q96KG7 1140 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 TLNRD1Q9H1K6 362 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 MRPS18AQ9NVS2 196 aaKnown RBP17.58■□□□□ 0.41
UPF1-207ENST00000599848 PXMP4Q9Y6I8 212 aa17.58■□□□□ 0.41
UPF1-207ENST00000599848 RND2P52198 227 aa17.58■□□□□ 0.4
UPF1-207ENST00000599848 ARAP2Q8WZ64 1704 aa17.58■□□□□ 0.4
UPF1-207ENST00000599848 KBTBD11O94819 623 aa17.58■□□□□ 0.4
UPF1-207ENST00000599848 TMEM105Q8N8V8 129 aa17.58■□□□□ 0.4
UPF1-207ENST00000599848 IGKV1D-16P01601 117 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 VDAC2P45880 294 aaPredicted RBP17.57■□□□□ 0.4
UPF1-207ENST00000599848 MRPL24Q96A35 216 aaKnown RBP17.57■□□□□ 0.4
UPF1-207ENST00000599848 MRPL32Q9BYC8 188 aaKnown RBP17.57■□□□□ 0.4
UPF1-207ENST00000599848 ZFP30Q9Y2G7 519 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 IGHV3-21A0A0B4J1V1 117 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 FCGR2BP31994 310 aaPredicted RBP17.57■□□□□ 0.4
UPF1-207ENST00000599848 WDFY1Q8IWB7 410 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 RCC2Q9P258 522 aaKnown RBP17.57■□□□□ 0.4
UPF1-207ENST00000599848 MS4A3Q96HJ5 214 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 ATG101Q9BSB4 218 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 GHRHP01286 108 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 MT-ND6P03923 174 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 ZNF146Q15072 292 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 ST3GAL2Q16842 350 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 SPRED2Q7Z698 418 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 DLL3Q9NYJ7 618 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 CEBPEQ15744 281 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 HCP5Q6MZN7 132 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 C8orf46Q8TAG6 207 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 OSR1Q8TAX0 266 aaPredicted RBP17.57■□□□□ 0.4
UPF1-207ENST00000599848 VPS25Q9BRG1 176 aa17.57■□□□□ 0.4
UPF1-207ENST00000599848 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.56■□□□□ 0.4
UPF1-207ENST00000599848 NPFFO15130 113 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 PAGE4O60829 102 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 APCSP02743 223 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 SAPCD1Q5SSQ6 148 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 TEX261Q6UWH6 196 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 ALKBH7Q9BT30 221 aaPredicted RBP17.56■□□□□ 0.4
UPF1-207ENST00000599848 TRAV39A0A0B4J263 110 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 ANOS1P23352 680 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 CFHR1Q03591 330 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 ZXDCQ2QGD7 858 aaPredicted RBP17.56■□□□□ 0.4
UPF1-207ENST00000599848 H1FOOQ8IZA3 346 aaPredicted RBP17.56■□□□□ 0.4
UPF1-207ENST00000599848 TMEM54Q969K7 222 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.56■□□□□ 0.4
UPF1-207ENST00000599848 TRBV5-3A0A0A0MS03 114 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 A6NDN8 102 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 ACSF3Q4G176 576 aaPredicted RBP17.56■□□□□ 0.4
UPF1-207ENST00000599848 RSG1Q9BU20 258 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 TMEM140Q9NV12 185 aa17.56■□□□□ 0.4
UPF1-207ENST00000599848 TAF1P21675 1872 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 DLX6P56179 175 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms