RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 SCOCQ9UIL1 159 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 SH2D7A6NKC9 451 aaPredicted RBP13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 KCNAB3O43448 404 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 SLC22A5O76082 557 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 IGHG2P01859 326 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 TMBIM6P55061 237 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 ACTBP60709 375 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 TAGLNQ01995 201 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 MMDQ15546 238 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 C2orf68Q2NKX9 166 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 SLC35E3Q7Z769 313 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 FOXRED2Q8IWF2 684 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 Q8N9W7 124 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 BEST4Q8NFU0 473 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 OR5AN1Q8NGI8 311 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 RNF5Q99942 180 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 OR2D2Q9H210 308 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 PLSCR3Q9NRY6 295 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 KIAA1456Q9P272 454 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 WASHC3Q9Y3C0 194 aa13.72□□□□□ -0.21
SHKBP1-212ENST00000596163 H7C2Y5 167 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 M0R1X1 148 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 APOA2P02652 100 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 LUMP51884 338 aaPredicted RBP13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 TAS2R20P59543 309 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 TMEM95Q3KNT9 176 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 FAM131AQ6UXB0 335 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 OR5AU1Q8NGC0 362 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 CHPT1Q8WUD6 406 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 IFT46Q9NQC8 304 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 OR2W1Q9Y3N9 320 aa13.71□□□□□ -0.21
SHKBP1-212ENST00000596163 H0YJW9 148 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 NBR2O15453 112 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 PRSS3P35030 304 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 F2RL1P55085 397 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 SLC35B1P78383 322 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 CBX3Q13185 183 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 C11orf44Q8N8P7 122 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 WIPF2Q8TF74 440 aaPredicted RBP13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 GON7Q9BXV9 100 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 NECAP2Q9NVZ3 263 aa13.7□□□□□ -0.22
SHKBP1-212ENST00000596163 FAM25AB3EWG3 89 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 FAM25CB3EWG5 89 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 FAM25GB3EWG6 89 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 AP4M1O00189 453 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 PROP1O75360 226 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 EIF4EP06730 217 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 CSF1P09603 554 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 GLDNQ6ZMI3 551 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 PDPNQ86YL7 162 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 FAM71E2Q8N5Q1 922 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 GVQW1Q8N7I0 195 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 NPBQ8NG41 125 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 OR4X2Q8NGF9 303 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 ADTRPQ96IZ2 230 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 SDHAF2Q9NX18 166 aa13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 MRPS7Q9Y2R9 242 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-212ENST00000596163 PSMB11A5LHX3 300 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 HPGDSO60760 199 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 HLA-DQB1P01920 261 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 OPN1MWP04001 364 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 OPN1MW2P0DN77 364 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 OPN1MW3P0DN78 364 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 RRASP10301 218 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 CD28P10747 220 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 NFYAP23511 347 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 THBS3P49746 956 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 LIN54Q6MZP7 749 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 NDUFA11Q86Y39 141 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 DRAXINQ8NBI3 349 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 OR5AP2Q8NGF4 316 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 C15orf40Q8WUR7 153 aa13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 FLYWCH2Q96CP2 140 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 TSNAXQ99598 290 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-212ENST00000596163 PTHLHP12272 177 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 ELK1P19419 428 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 RPS16P62249 146 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 PLGLAQ15195 96 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 C5orf64Q2M2E5 130 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 TREML4Q6UXN2 200 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 COMMD1Q8N668 190 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 ZNF645Q8N7E2 425 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 ZNF383Q8NA42 475 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 RITA1Q96K30 269 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 MMP27Q9H306 513 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 SCPEP1Q9HB40 452 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 SLC35D1Q9NTN3 355 aa13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 ZNF107Q9UII5 783 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-212ENST00000596163 TCRBV4S1A1TA0A5B7 111 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 J3QRK9 145 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 SULT1C2O00338 296 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 RRHO14718 337 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 TUSC2O75896 110 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 TPPPO94811 219 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 NDUFA3O95167 84 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 HLA-DRB1P01911 266 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 OR5H8P0DN80 308 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 FCGR2CP31995 323 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 LGALS7P47929 136 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 CD83Q01151 205 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms