RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZNF580Q9UK33 172 aa12.78□□□□□ -0.36
TRIM28-206ENST00000595974 WASHC3Q9Y3C0 194 aa12.78□□□□□ -0.36
TRIM28-206ENST00000595974 LINC01548A6NM66 108 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 H0YJW9 148 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 RBBP9O75884 186 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 NDUFA3O95167 84 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 HLA-DRB1P01911 266 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 DEFA6Q01524 100 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 PNLIPRP3Q17RR3 467 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 CROCCP3Q8IVE0 287 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 NPBQ8NG41 125 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 SLC25A38Q96DW6 304 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 DCSTAMPQ9H295 470 aa12.77□□□□□ -0.37
TRIM28-206ENST00000595974 ELF5Q9UKW6 265 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-206ENST00000595974 A0A0A6YYH2 397 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 TMEM235A6NFC5 223 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 A6NJ64 397 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 IGF1P05019 195 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 CNTFRP26992 372 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 GNG2P59768 71 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 C5orf64Q2M2E5 130 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 ZNF260Q3ZCT1 412 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 GLDNQ6ZMI3 551 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-206ENST00000595974 OR5H6Q8NGV6 325 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 NUDCD2Q8WVJ2 157 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 GINS4Q9BRT9 223 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 OR2D2Q9H210 308 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 RNF150Q9ULK6 438 aa12.76□□□□□ -0.37
TRIM28-206ENST00000595974 H7C2Y5 167 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 PROP1O75360 226 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 APOA2P02652 100 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 PF4P02776 101 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 TFAP2AP05549 437 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 OR8U9P0C7N5 309 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 OR5H8P0DN80 308 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 VDAC1P21796 283 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 SLC6A1P30531 599 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 RPL23AP62750 156 aaKnown RBP12.75□□□□□ -0.37
TRIM28-206ENST00000595974 TEX38Q6PEX7 206 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 OR8U1Q8NH10 309 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 RITA1Q96K30 269 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 RNF5Q99942 180 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 ZFP57Q9NU63 452 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 SPATA2Q9UM82 520 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 GAB2Q9UQC2 676 aa12.75□□□□□ -0.37
TRIM28-206ENST00000595974 IGKV1D-8A0A087WSZ0 117 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 M0R1X1 148 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 RRHO14718 337 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 CTXN2P0C2S0 81 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 TGFBR1P36897 503 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 CFHR3Q02985 330 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 SAMD5Q5TGI4 173 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 PDPNQ86YL7 162 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 H1FOOQ8IZA3 346 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-206ENST00000595974 ZNF383Q8NA42 475 aa12.74□□□□□ -0.37
TRIM28-206ENST00000595974 RBM7Q9Y580 266 aaKnown RBP12.74□□□□□ -0.37
TRIM28-206ENST00000595974 IGHV7-81A0A0B4J1V7 117 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 G3V4G9 280 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 WIPF1O43516 503 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 SPDEFO95238 335 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 ELANEP08246 267 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 LSM3P62310 102 aaKnown RBP12.73□□□□□ -0.37
TRIM28-206ENST00000595974 FOXE3Q13461 319 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 CXorf66Q5JRM2 361 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-206ENST00000595974 LIN54Q6MZP7 749 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 C1QL4Q86Z23 238 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 RNF152Q8N8N0 203 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 DRAXINQ8NBI3 349 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-206ENST00000595974 ST6GALNAC5Q9BVH7 336 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 OR51J1Q9H342 316 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 DIABLOQ9NR28 239 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 SDHAF2Q9NX18 166 aa12.73□□□□□ -0.37
TRIM28-206ENST00000595974 TRAV18A0A075B6X5 111 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 ATP6V0E1O15342 81 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 SSX5O60225 188 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 IGHG4P01861 327 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 IGKV1-16P04430 117 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 CD33P20138 364 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 RPS19P39019 145 aaKnown RBP12.72□□□□□ -0.37
TRIM28-206ENST00000595974 PLGLAQ15195 96 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 BEAN1Q3B7T3 259 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 CNIH2Q6PI25 160 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 WFDC9Q8NEX5 89 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 OR13F1Q8NGS4 319 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 TSNAXQ99598 290 aaKnown RBP12.72□□□□□ -0.37
TRIM28-206ENST00000595974 FUNDC2Q9BWH2 189 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 FBXL15Q9H469 300 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 PARP11Q9NR21 331 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 SLC35D1Q9NTN3 355 aa12.72□□□□□ -0.37
TRIM28-206ENST00000595974 NUDT19A8MXV4 375 aa12.71□□□□□ -0.37
TRIM28-206ENST00000595974 SMIM18P0DKX4 95 aa12.71□□□□□ -0.37
TRIM28-206ENST00000595974 THBS3P49746 956 aa12.71□□□□□ -0.37
TRIM28-206ENST00000595974 TAGLNQ01995 201 aaKnown RBP12.71□□□□□ -0.37
TRIM28-206ENST00000595974 UBE2NLQ5JXB2 153 aa12.71□□□□□ -0.37
TRIM28-206ENST00000595974 KPRPQ5T749 579 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-206ENST00000595974 KLHL30-AS1Q8NEE0 82 aa12.71□□□□□ -0.37
TRIM28-206ENST00000595974 SLC25A46Q96AG3 418 aa12.71□□□□□ -0.37
TRIM28-206ENST00000595974 KCTD12Q96CX2 325 aaKnown RBP12.71□□□□□ -0.37
TRIM28-206ENST00000595974 ANXA10Q9UJ72 324 aa12.71□□□□□ -0.37
TRIM28-206ENST00000595974 RPLP1P05386 114 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms