RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	GPR12	P47775	334 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	GPR107	Q5VW38	600 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	FAM131A	Q6UXB0	335 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	GPR141	Q7Z602	305 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	SLC35E3	Q7Z769	313 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	C11orf44	Q8N8P7	122 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	ACOT12	Q8WYK0	555 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	RBMXL1	Q96E39	390 aa	Known RBP	12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	RITA1	Q96K30	269 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	RNF5	Q99942	180 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	GINS4	Q9BRT9	223 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	MMP27	Q9H306	513 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	ZNF580	Q9UK33	172 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	ADARB2-AS1	A8MUL3	147 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	RBBP9	O75884	186 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	OR8U9	P0C7N5	309 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	RORC	P51449	518 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	MMD	Q15546	238 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	TCTEX1D4	Q5JR98	221 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	CENPV	Q7Z7K6	275 aa	Predicted RBP	12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	HOGA1	Q86XE5	327 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	NDUFA11	Q86Y39	141 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	ZNF383	Q8NA42	475 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	OR8U1	Q8NH10	309 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	CHPT1	Q8WUD6	406 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	RASL11B	Q9BPW5	248 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	OR2D2	Q9H210	308 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	WASHC3	Q9Y3C0	194 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	NOTCH1	P46531	2555 aa		12.84	□□□□□ -0.35
ERBB2-222	ENST00000584908	LINC01548	A6NM66	108 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	NBR2	O15453	112 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	KCNAB3	O43448	404 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	TSPAN15	O95858	294 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	APOA1	P02647	267 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	CSF1	P09603	554 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	CBX5	P45973	191 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	GLDN	Q6ZMI3	551 aa	Predicted RBP	12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	FOXRED2	Q8IWF2	684 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	BEST4	Q8NFU0	473 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	C5orf30	Q96GV9	206 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	CITED2	Q99967	270 aa	Predicted RBP	12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	SDHAF2	Q9NX18	166 aa		12.83	□□□□□ -0.36
ERBB2-222	ENST00000584908	AP4M1	O00189	453 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	PLXNB1	O43157	2135 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	TUSC2	O75896	110 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	HLA-DRB1	P01911	266 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	HLA-DQB1	P01920	261 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	CNTFR	P26992	372 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	SOX6	P35712	828 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	C5orf64	Q2M2E5	130 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	TMEM69	Q5SWH9	247 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	STPG2	Q8N412	459 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	GVQW1	Q8N7I0	195 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	NOL4L	Q96MY1	436 aa	Predicted RBP	12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	BCL7B	Q9BQE9	202 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	HSPB9	Q9BQS6	159 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	COMMD3	Q9UBI1	195 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	ANAPC10	Q9UM13	185 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	OR2W1	Q9Y3N9	320 aa		12.82	□□□□□ -0.36
ERBB2-222	ENST00000584908	PSMB11	A5LHX3	300 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908		M0R1X1	148 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	IGF1	P05019	195 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	EIF4E	P06730	217 aa	Known RBP	12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	PTHLH	P12272	177 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	ZNF182	P17025	639 aa	Predicted RBP	12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	RPL5	P46777	297 aa	Known RBP	12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	TAS2R20	P59543	309 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	TAGLN	Q01995	201 aa	Known RBP	12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	HIST2H2BD	Q6DRA6	164 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	C10orf99	Q6UWK7	81 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	PDPN	Q86YL7	162 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	COMMD1	Q8N668	190 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	DRAXIN	Q8NBI3	349 aa	Predicted RBP	12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	OR4X2	Q8NGF9	303 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908	SNAPC3	Q92966	411 aa		12.81	□□□□□ -0.36
ERBB2-222	ENST00000584908		H7C2Y5	167 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	SLC22A5	O76082	557 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	OPN1MW	P04001	364 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	IGKV1-16	P04430	117 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	OPN1MW2	P0DN77	364 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	OPN1MW3	P0DN78	364 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	NFYA	P23511	347 aa	Predicted RBP	12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	TMBIM6	P55061	237 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	LINC00205	P59089	165 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	ZNF645	Q8N7E2	425 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	RAB2B	Q8WUD1	216 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	AP3S1	Q92572	193 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	GON7	Q9BXV9	100 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	KIAA1456	Q9P272	454 aa		12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	ZNF107	Q9UII5	783 aa	Predicted RBP	12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	RBM7	Q9Y580	266 aa	Known RBP	12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	TSSC4	Q9Y5U2	329 aa	Predicted RBP	12.8	□□□□□ -0.36
ERBB2-222	ENST00000584908	RRH	O14718	337 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	SPDEF	O95238	335 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	APOA2	P02652	100 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	NAT1	P18440	290 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	DUT	P33316	252 aa	Known RBP	12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	THBS3	P49746	956 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	LUM	P51884	338 aa	Predicted RBP	12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	SLC35B1	P78383	322 aa		12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms