RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 COX5AP20674 150 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 OR3A2P47893 321 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 SERPINB10P48595 397 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 CAV2P51636 162 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 BRWD1-AS2P59051 145 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 RAB31Q13636 194 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 EIF2B1Q14232 305 aaKnown RBP5.63□□□□□ -1.51
VPS53-217ENST00000575100 ENDOGQ14249 297 aaKnown RBP5.63□□□□□ -1.51
VPS53-217ENST00000575100 CDK10Q15131 360 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 UBE2UQ5VVX9 321 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 FBXW9Q5XUX1 488 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 ZNF322Q6U7Q0 402 aaPredicted RBP5.63□□□□□ -1.51
VPS53-217ENST00000575100 FOXL2NBQ6ZUU3 175 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 ACOT7LQ6ZUV0 252 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 FAM19A1Q7Z5A9 133 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 OR5L1Q8NGL2 311 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 OR2T27Q8NH04 317 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 RAB3CQ96E17 227 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 RHOFQ9HBH0 211 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 TMEM38BQ9NVV0 291 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 MCUBQ9NWR8 336 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 NF1P21359 2839 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 INTS1Q8N201 2190 aaKnown RBP5.63□□□□□ -1.51
VPS53-217ENST00000575100 PRRC2AP48634 2157 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 TRAV8-7A0A075B6U6 113 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 KIR2DL5BA0A0G2JN68 375 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 KIR2DL5BA0A0G2JPC4 375 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 A0A1B0GU03 582 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 TRDCB7Z8K6 153 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 F5H768 121 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 H3BSA7 217 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 HLA-AP01891 365 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 ACSM4P0C7M7 580 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 MUC1P15941 1255 aaPredicted RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 MYL12AP19105 171 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 PSMB9P28065 219 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 LOXP28300 417 aaPredicted RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 CEACAM8P31997 349 aaPredicted RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 SAA4P35542 130 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 RPL5P46777 297 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 WNT4P56705 351 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 NANOS3P60323 173 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 RPL8P62917 257 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 SSX1Q16384 188 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 ACSM3Q53FZ2 586 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 SYT6Q5T7P8 510 aaPredicted RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 SLC18B1Q6NT16 456 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 SKA3Q8IX90 412 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 KIR2DL5AQ8N109 375 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 ARRDC1Q8N5I2 433 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 OR5B3Q8NH48 314 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 OR2AE1Q8NHA4 323 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 KIR2DL5BQ8NHK3 375 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 THEM6Q8WUY1 208 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 OR2V2Q96R30 315 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 MGLLQ99685 303 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 OVOL2Q9BRP0 275 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 CABLES2Q9BTV7 478 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 LINC00470Q9BZP3 86 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 Q9HAA7 133 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 NOX3Q9HBY0 568 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 ARHGAP21Q5T5U3 1957 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 CCDC160A6NGH7 325 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 OR5B21A6NL26 309 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 LEUTXA8MZ59 168 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 SEC14L6B5MCN3 397 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 RPL36A-HNRNPH2H7BZ11 118 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 J3QLW9 94 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 MYL12BO14950 172 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 MRPS14O60783 128 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 LYZL6O75951 148 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 C8orf88P0DMB2 117 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 ZNF19P17023 458 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 GZMHP20718 246 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 IGHV1-2P23083 117 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 PAX6P26367 422 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 TGFBR1P36897 503 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 OR10A3P58181 314 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 RANP62826 216 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 TFF3Q07654 80 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 INSL4Q14641 139 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 RSPO1Q2MKA7 263 aaPredicted RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 FAM27BQ5VT28 67 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 RBMS3Q6XE24 437 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 Q6ZT83 130 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 TMEM144Q7Z5S9 345 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 ANGPTL5Q86XS5 388 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 SLC22A24Q8N4F4 322 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 SLC7A6Q92536 515 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 RBM38Q9H0Z9 239 aaKnown RBP5.62□□□□□ -1.51
VPS53-217ENST00000575100 CSMD2Q7Z408 3487 aa5.62□□□□□ -1.51
VPS53-217ENST00000575100 TACC2O95359 2948 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 IGHV4-28A0A0C4DH34 117 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 A0A1W2PR80 420 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 IRGMA1A4Y4 181 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 C5orf63A6NC05 138 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 ZNF587BE7ETH6 402 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 EIF3GO75821 320 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS53-217ENST00000575100 MMP7P09237 267 aaPredicted RBP5.61□□□□□ -1.51
VPS53-217ENST00000575100 SCGB1A1P11684 91 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms