RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KIR2DS1Q14954 304 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 TIMM50Q3ZCQ8 353 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 STPG2Q8N412 459 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OR8H1Q8NGG4 311 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OR5AN1Q8NGI8 311 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OR13F1Q8NGS4 319 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OR10J5Q8NHC4 309 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 EDARADDQ8WWZ3 215 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OR2D2Q9H210 308 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 FBXL15Q9H469 300 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 ZNF221Q9UK13 617 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 ETV7Q9Y603 341 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 WSB1Q9Y6I7 421 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 G3V4G9 280 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 H7C2Y5 167 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 FCN1O00602 326 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 NBR2O15453 112 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 WIPF1O43516 503 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 IGKV1-16P04430 117 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 GSTP1P09211 210 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 NFYAP23511 347 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 SOX6P35712 828 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 SERPINB10P48595 397 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 GNG2P59768 71 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 NDPQ00604 133 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 C5orf64Q2M2E5 130 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 FAM71F2Q6NXP2 309 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 Q6ZS49 121 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 H1FOOQ8IZA3 346 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 GVQW1Q8N7I0 195 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 OR4X2Q8NGF9 303 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 CHPT1Q8WUD6 406 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 PHF21AQ96BD5 680 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 KRTAP3-3Q9BYR6 98 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 KRTAP3-2Q9BYR7 98 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 TOLLIPQ9H0E2 274 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 SDHAF2Q9NX18 166 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 SPATA2Q9UM82 520 aa9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 TSSC4Q9Y5U2 329 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-208ENST00000554165 IGHV7-81A0A0B4J1V7 117 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 MEIS3P1A6NDR6 274 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 G3V318 75 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 AP4M1O00189 453 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 NDUFA3O95167 84 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 RPLP1P05386 114 aaKnown RBP9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 SRSF7Q16629 238 aaKnown RBP eCLIP9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 FOXRED2Q8IWF2 684 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 NPBQ8NG41 125 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 CLCC1Q96S66 551 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 GINS4Q9BRT9 223 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 AUNIPQ9H7T9 357 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 TPSG1Q9NRR2 321 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 GAB2Q9UQC2 676 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 WASHC3Q9Y3C0 194 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 FBXO7Q9Y3I1 522 aa9.09□□□□□ -0.95
CCDC88C-208ENST00000554165 IGKV1D-13A0A0B4J2D9 117 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 OR5H14A6NHG9 310 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 RRHO14718 337 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 ATP6V0E1O15342 81 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 PRB2P02812 416 aaPredicted RBP9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 TFAP2AP05549 437 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 IGKV1-13P0DP09 117 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 SCAND1P57086 179 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 RPL23AP62750 156 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 CFHR3Q02985 330 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 ARL6IP1Q15041 203 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 PSG5Q15238 335 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 PNLIPRP3Q17RR3 467 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 OXLD1Q5BKU9 147 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 GPR107Q5VW38 600 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 LIN54Q6MZP7 749 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 ETV3LQ6ZN32 361 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 SAMD12Q8N8I0 201 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 OR4F17Q8NGA8 305 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 SLC25A46Q96AG3 418 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 DUX3Q96PT4 197 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 OR4F4Q96R69 305 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 DCSTAMPQ9H295 470 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 PARP11Q9NR21 331 aa9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 RBM7Q9Y580 266 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-208ENST00000554165 LINC00473A8K010 186 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 SCGNO76038 276 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 DIRAS3O95661 229 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 HLA-DRB1P01911 266 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 EIF4EP06730 217 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 PF4V1P10720 104 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 EGR2P11161 476 aaPredicted RBP9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 MC5RP33032 325 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 RPS16P62249 146 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 CX3CL1P78423 397 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 PITPNAQ00169 270 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 PJVKQ0ZLH3 352 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 CTF1Q16619 201 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 CNIH2Q6PI25 160 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 C8orf86Q6ZUL3 223 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 BVESQ8NE79 360 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 BEST4Q8NFU0 473 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 GPHA2Q96T91 129 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 KLK15Q9H2R5 256 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms