RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 METTL9Q9H1A3 318 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.34□□□□□ -2.03
CD44-223ENST00000526553 TRAPPC1Q9Y5R8 145 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 PRRC2BQ5JSZ5 2229 aaKnown RBP2.34□□□□□ -2.04
CD44-223ENST00000526553 HIVEP2P31629 2446 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 PIEZO1Q92508 2521 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 COL27A1Q8IZC6 1860 aaPredicted RBP2.33□□□□□ -2.04
CD44-223ENST00000526553 MYH1P12882 1939 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 MYH8P13535 1937 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 CDH23Q9H251 3354 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 BRWD1Q9NSI6 2320 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 MCM3APO60318 1980 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 IGHV1-45A0A0A0MS14 117 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 CCRL2O00421 344 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 HPGDSO60760 199 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 EPPINO95925 133 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 INPP1P49441 399 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 SARNPP82979 210 aaKnown RBP2.33□□□□□ -2.04
CD44-223ENST00000526553 MMDQ15546 238 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 TMEM31Q5JXX7 168 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 TMEM69Q5SWH9 247 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 KRTAP5-7Q6L8G8 165 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 DRAM2Q6UX65 266 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 FAM131AQ6UXB0 335 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 TMEM144Q7Z5S9 345 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 BLIDQ8IZY5 108 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 RPRMLQ8N4K4 120 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 C3orf22Q8N5N4 141 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 GPR22Q99680 433 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 SEC22CQ9BRL7 303 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 TBL2Q9Y4P3 447 aaKnown RBP2.33□□□□□ -2.04
CD44-223ENST00000526553 LRRC37A2A6NM11 1700 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 LOC285556D6RIA3 1793 aa2.33□□□□□ -2.04
CD44-223ENST00000526553 DAPL1A0PJW8 107 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 GOLGA8KD6RF30 607 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 C8orf87E5RJ46 101 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 F5H5P2 479 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 GOLGA8MH3BSY2 632 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 NIPSNAP2O75323 286 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 E2F6O75461 281 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 FSTL3O95633 263 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 RNASE2P10153 161 aaKnown RBP2.32□□□□□ -2.04
CD44-223ENST00000526553 ZNF3P17036 446 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 TGFBR1P36897 503 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 GDI2P50395 445 aaKnown RBP2.32□□□□□ -2.04
CD44-223ENST00000526553 MGAT3Q09327 533 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 SKP2Q13309 424 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 ZNF235Q14590 738 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 TBC1D28Q2M2D7 210 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 SLC36A2Q495M3 483 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 FKBP1CQ5VVH2 108 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 SGPP2Q8IWX5 399 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 OR2K2Q8NGT1 345 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 OR5K1Q8NHB7 308 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 DNAJB3Q8WWF6 145 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 FXYD5Q96DB9 178 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 CMTM5Q96DZ9 223 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 SLC19A3Q9BZV2 496 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 CHST5Q9GZS9 411 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 FAM107BQ9H098 131 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 TXNIPQ9H3M7 391 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 UBQLN4Q9NRR5 601 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 USE1Q9NZ43 259 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 ZDBF2Q9HCK1 2354 aa2.32□□□□□ -2.04
CD44-223ENST00000526553 MYO5AQ9Y4I1 1855 aaKnown RBP2.32□□□□□ -2.04
CD44-223ENST00000526553 CACNA1GO43497 2377 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 COL11A1P12107 1806 aaPredicted RBP2.31□□□□□ -2.04
CD44-223ENST00000526553 MUC3AQ02505 3323 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 ISLRO14498 428 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 ZW10O43264 779 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 ATP8B1O43520 1251 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 STX10O60499 249 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 ATP6V1G2O95670 118 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 PFN1P07737 140 aaKnown RBP2.31□□□□□ -2.04
CD44-223ENST00000526553 OCM2P0CE71 109 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 CFL1P23528 166 aaKnown RBP2.31□□□□□ -2.04
CD44-223ENST00000526553 MAGEA2P43356 314 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 PSMD7P51665 324 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 MP68P56378 58 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 UBE2IP63279 158 aaKnown RBP2.31□□□□□ -2.04
CD44-223ENST00000526553 DNAL1Q4LDG9 190 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 CPNE9Q8IYJ1 553 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 TMEM251Q8N6I4 163 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.31□□□□□ -2.04
CD44-223ENST00000526553 CMBLQ96DG6 245 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 SHANK2-AS3Q9BTD1 123 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 FBXL15Q9H469 300 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 METTL17Q9H7H0 456 aaPredicted RBP2.31□□□□□ -2.04
CD44-223ENST00000526553 PLEKHJ1Q9NW61 149 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 TMEM216Q9P0N5 145 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 REV3LO60673 3130 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 PTPRZ1P23471 2315 aaPredicted RBP2.31□□□□□ -2.04
CD44-223ENST00000526553 CACNA1AO00555 2505 aa2.31□□□□□ -2.04
CD44-223ENST00000526553 BAZ2AQ9UIF9 1905 aaKnown RBP2.3□□□□□ -2.04
CD44-223ENST00000526553 MYO7AQ13402 2215 aa2.3□□□□□ -2.04
CD44-223ENST00000526553 SPTBN4Q9H254 2564 aa2.3□□□□□ -2.04
CD44-223ENST00000526553 GOLGA6L19H0YKK7 550 aa2.3□□□□□ -2.04
CD44-223ENST00000526553 M0QYV0 167 aa2.3□□□□□ -2.04
CD44-223ENST00000526553 COCHO43405 550 aa2.3□□□□□ -2.04
CD44-223ENST00000526553 ADAP1O75689 374 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms