RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	RAB27B	O00194	218 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	FCN1	O00602	326 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	RRH	O14718	337 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	HSPA12A	O43301	675 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	RBBP9	O75884	186 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	EGR2	P11161	476 aa	Predicted RBP	5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	RAB6A	P20340	208 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	CRIP2	P52943	208 aa	Predicted RBP	5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	LINC00205	P59089	165 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	GABARAPL2	P60520	117 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	NDP	Q00604	133 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	RUNX1	Q01196	453 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	FHL3	Q13643	280 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	DEFB136	Q30KP8	78 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	UBE2U	Q5VVX9	321 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	ZNF660	Q6AZW8	331 aa	Predicted RBP	5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	GLDN	Q6ZMI3	551 aa	Predicted RBP	5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	NR2C2AP	Q86WQ0	139 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	SPART	Q8N0X7	666 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	ZNF491	Q8N8L2	437 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	ZNF383	Q8NA42	475 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	OR10R2	Q8NGX6	335 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	C4orf3	Q8WVX3	66 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	EDARADD	Q8WWZ3	215 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	DPF1	Q92782	380 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	RAB3C	Q96E17	227 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	UBE2E2	Q96LR5	201 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	FBXL15	Q9H469	300 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	PARP11	Q9NR21	331 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	KIAA1456	Q9P272	454 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	RNF150	Q9ULK6	438 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	GAB2	Q9UQC2	676 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	WASHC3	Q9Y3C0	194 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	FBXO7	Q9Y3I1	522 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	RYR3	Q15413	4870 aa		5.62	□□□□□ -1.51
VPS52-221	ENST00000495755	TRBV6-7	A0A0A0MS04	114 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755		A0A0B4J203	849 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755		H7C2Y5	167 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755		I3L521	148 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	MFNG	O00587	321 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	FABP7	O15540	132 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	SOX15	O60248	233 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	DIRAS3	O95661	229 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	FCGR3A	P08637	254 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	GSTP1	P09211	210 aa	Known RBP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	CD3G	P09693	182 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	GSTT2	P0CG29	244 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	GSTT2B	P0CG30	244 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	SNRPB	P14678	240 aa	Known RBP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	HIST1H1D	P16402	221 aa	Known RBP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	GNB3	P16520	340 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	RAB3B	P20337	219 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	MYL9	P24844	172 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	FGF9	P31371	208 aa	Predicted RBP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	SERPINB10	P48595	397 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	RAB9A	P51151	201 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	RAB25	P57735	213 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	CX3CL1	P78423	397 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	PSG5	Q15238	335 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	SRSF7	Q16629	238 aa	Known RBP eCLIP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	IGSF11	Q5DX21	431 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	C22orf42	Q6IC83	251 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	TMEM65	Q6PI78	240 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	DRAXIN	Q8NBI3	349 aa	Predicted RBP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	OR4A4P	Q8NGN8	299 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	OR5M8	Q8NGP6	311 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	OR1N2	Q8NGR9	330 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	CABLES2	Q9BTV7	478 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	YTHDF1	Q9BYJ9	559 aa	Known RBP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	GNB4	Q9HAV0	340 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	RDH8	Q9NYR8	311 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	ZMAT5	Q9UDW3	170 aa	Known RBP	5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	SCOC	Q9UIL1	159 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	ZNF221	Q9UK13	617 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	VSIG4	Q9Y279	399 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	NUBP2	Q9Y5Y2	271 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	NBEAL2	Q6ZNJ1	2754 aa		5.61	□□□□□ -1.51
VPS52-221	ENST00000495755	METTL21EP	A6NDL7	271 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755		M0R1X1	148 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	SPDEF	O95238	335 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	IGKV1-16	P04430	117 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	TFAP2A	P05549	437 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	GADD45A	P24522	165 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	LUM	P51884	338 aa	Predicted RBP	5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	GNB1	P62873	340 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	MRPS15	P82914	257 aa	Known RBP	5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	DGCR2	P98153	550 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	AKIRIN2	Q53H80	203 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	DEFB121	Q5J5C9	76 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	ASPHD1	Q5U4P2	390 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	ZNF562	Q6V9R5	426 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755		Q6ZS49	121 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	PDPN	Q86YL7	162 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	TCTEX1D1	Q8N7M0	179 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	OR11H1	Q8NG94	326 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	OR10J5	Q8NHC4	309 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	FCGR1B	Q92637	280 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	C5orf30	Q96GV9	206 aa		5.6	□□□□□ -1.51
VPS52-221	ENST00000495755	TSNAX	Q99598	290 aa	Known RBP	5.6	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms