RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 J3QR06 171 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 RBFOX2O43251 390 aaKnown RBP eCLIP9.38□□□□□ -0.91
C9orf3-220ENST00000489318 FOXH1O75593 365 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 IGLV1-47P01700 117 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 C1QBP02746 253 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 RPA2P15927 270 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 DNASE1P24855 282 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 ERVFRD-1P60508 538 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 RPL30P62888 115 aaKnown RBP9.38□□□□□ -0.91
C9orf3-220ENST00000489318 SP6Q3SY56 376 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 BEND2Q8NDZ0 799 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 OR51H1Q8NH63 302 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 DDB2Q92466 427 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 C1orf159Q96HA4 380 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 RNF150Q9ULK6 438 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 KPTNQ9Y664 436 aa9.38□□□□□ -0.91
C9orf3-220ENST00000489318 IGHV2-26A0A0B4J1V2 119 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 A0A1W2PPE3 182 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 LINC00473A8K010 186 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 FAM157AC9JC47 383 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 CCSO14618 274 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 ADAP1O75689 374 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 SIX6O95475 246 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 IGHV3-7P01780 117 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 HNRNPCP07910 306 aaKnown RBP eCLIP9.37□□□□□ -0.91
C9orf3-220ENST00000489318 PRTN3P24158 256 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 GNG10P50151 68 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 BRWD1-AS2P59051 145 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 IL15RAQ13261 267 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 CLEC12BQ2HXU8 276 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 ZNF585BQ52M93 769 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 RPL39P5Q59GN2 51 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 TMEM268Q5VZI3 342 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 C1orf229Q6ZS94 237 aaPredicted RBP9.37□□□□□ -0.91
C9orf3-220ENST00000489318 SELENOHQ8IZQ5 122 aaKnown RBP9.37□□□□□ -0.91
C9orf3-220ENST00000489318 LYG1Q8N1E2 194 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 SLC35G3Q8N808 338 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 UXS1Q8NBZ7 420 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 RBPMSQ93062 196 aaKnown RBP9.37□□□□□ -0.91
C9orf3-220ENST00000489318 ST6GALNAC6Q969X2 333 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 ADTRPQ96IZ2 230 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 CLEC7AQ9BXN2 247 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 NMES1Q9C002 83 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 SIRPDQ9H106 197 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 METTL8Q9H825 291 aaKnown RBP9.37□□□□□ -0.91
C9orf3-220ENST00000489318 TMED3Q9Y3Q3 217 aa9.37□□□□□ -0.91
C9orf3-220ENST00000489318 ODF3BA8MYP8 253 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 IGKV1-39P01597 117 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 IGKV1D-39P04432 117 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 MMP9P14780 707 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 VDAC1P21796 283 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 KIR2DS2P43631 304 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 THBS3P49746 956 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 HLA-DRB5Q30154 266 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 NMSQ5H8A3 153 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 GGNBP1Q5YKI7 109 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 PRSS57Q6UWY2 283 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 BTNL3Q6UXE8 466 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 GSG1LQ6UXU4 331 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 ABHD12Q8N2K0 398 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 OR11H6Q8NGC7 330 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 OR2T35Q8NGX2 323 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 TCTEX1D2Q8WW35 142 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 TMEM186Q96B77 213 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 S1PR3Q99500 378 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 ONECUT1Q9UBC0 465 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 ANKRD17O75179 2603 aaKnown RBP9.36□□□□□ -0.91
C9orf3-220ENST00000489318 GCN1Q92616 2671 aaKnown RBP9.36□□□□□ -0.91
C9orf3-220ENST00000489318 CRYBG3Q68DQ2 2970 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 PTPN13Q12923 2485 aa9.36□□□□□ -0.91
C9orf3-220ENST00000489318 MPTX1A8MV57 137 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 M0R1X1 148 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 IFNA21P01568 189 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 SERPINE2P07093 398 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 HOXB5P09067 269 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 P0C879 139 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 IL3RAP26951 378 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 GZMKP49863 264 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 LCN2P80188 198 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 CYCSP99999 105 aaKnown RBP9.35□□□□□ -0.91
C9orf3-220ENST00000489318 ZFP69Q49AA0 526 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 NCR3LG1Q68D85 454 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 HIST2H2BCQ6DN03 193 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 HCP5Q6MZN7 132 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 LYZL2Q7Z4W2 148 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 KRTAP1-3Q8IUG1 177 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 ZNF695Q8IW36 515 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 SPAG16Q8N0X2 631 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 OR4P4Q8NGL7 312 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 OR13D1Q8NGV5 346 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 CD300LFQ8TDQ1 290 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 LSM10Q969L4 123 aaKnown RBP9.35□□□□□ -0.91
C9orf3-220ENST00000489318 WDR89Q96FK6 387 aaPredicted RBP9.35□□□□□ -0.91
C9orf3-220ENST00000489318 OR10C1Q96KK4 312 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 C2orf50Q96LR7 162 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 ZNRD1Q9P1U0 126 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 ARID1AO14497 2285 aa9.35□□□□□ -0.91
C9orf3-220ENST00000489318 RAMP3O60896 148 aa9.34□□□□□ -0.91
C9orf3-220ENST00000489318 SLC25A6P12236 298 aa9.34□□□□□ -0.91
C9orf3-220ENST00000489318 USF1P22415 310 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms