RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 VSIG4Q9Y279 399 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 WASHC3Q9Y3C0 194 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 V9GY05 133 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 TMEM272A0A1B0GTI8 110 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 OR8U8P0C7N1 319 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 CEACAM6P40199 344 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 RAB9AP51151 201 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 GNB1P62873 340 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 PLA2G7Q13093 441 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 C2orf76Q3KRA6 126 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 TMEM65Q6PI78 240 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 IZUMO2Q6UXV1 221 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 ZNF367Q7RTV3 350 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 RNF5Q99942 180 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 CMSS1Q9BQ75 279 aaKnown RBP12.66□□□□□ -0.38
COL9A3-208ENST00000469802 TOLLIPQ9H0E2 274 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 VCX3BQ9H321 246 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 KCNK7Q9Y2U2 307 aa12.66□□□□□ -0.38
COL9A3-208ENST00000469802 SHISA3A0PJX4 238 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 SEC14L6B5MCN3 397 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 HSPA12AO43301 675 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 EGR2P11161 476 aaPredicted RBP12.65□□□□□ -0.38
COL9A3-208ENST00000469802 RANBP1P43487 201 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 HSPA13P48723 471 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 PSMD7P51665 324 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 CX3CL1P78423 397 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 CD69Q07108 199 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 ZNF616Q08AN1 781 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 ECSCRQ19T08 205 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 CD200R1LQ6Q8B3 271 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 TCTEX1D1Q8N7M0 179 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 NDUFB11Q9NX14 153 aa12.65□□□□□ -0.38
COL9A3-208ENST00000469802 LSM4Q9Y4Z0 139 aaKnown RBP12.65□□□□□ -0.38
COL9A3-208ENST00000469802 SORL1Q92673 2214 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 TRAV1-2A0A0B4J238 106 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 TRDCB7Z8K6 153 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 FCN1O00602 326 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 DENRO43583 198 aaKnown RBP12.64□□□□□ -0.39
COL9A3-208ENST00000469802 SPDEFO95238 335 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 IGKV1-16P04430 117 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 MOGAT2Q3SYC2 334 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 HES5Q5TA89 166 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 ZNF383Q8NA42 475 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 OR1N2Q8NGR9 330 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 CABLES2Q9BTV7 478 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 RDH8Q9NYR8 311 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 RAB22AQ9UL26 194 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 BLOC1S6Q9UL45 172 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 GAB2Q9UQC2 676 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 FOXA2Q9Y261 457 aaPredicted RBP12.64□□□□□ -0.39
COL9A3-208ENST00000469802 NUBP2Q9Y5Y2 271 aa12.64□□□□□ -0.39
COL9A3-208ENST00000469802 TENM3Q9P273 2699 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 A0A1W2PN81 502 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 H7C2Y5 167 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 MFNGO00587 321 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 DIRAS3O95661 229 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 GSTP1P09211 210 aaKnown RBP12.63□□□□□ -0.39
COL9A3-208ENST00000469802 SNRPBP14678 240 aaKnown RBP12.63□□□□□ -0.39
COL9A3-208ENST00000469802 CHRNA7P36544 502 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 SERPINB10P48595 397 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 OR10A3P58181 314 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 PDPNQ86YL7 162 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 DRAXINQ8NBI3 349 aaPredicted RBP12.63□□□□□ -0.39
COL9A3-208ENST00000469802 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.63□□□□□ -0.39
COL9A3-208ENST00000469802 OR4A4PQ8NGN8 299 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 CNBD2Q96M20 576 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 OR5B12Q96R08 314 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 TPSG1Q9NRR2 321 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 RNF150Q9ULK6 438 aa12.63□□□□□ -0.39
COL9A3-208ENST00000469802 KMT2CQ8NEZ4 4911 aaKnown RBP12.63□□□□□ -0.39
COL9A3-208ENST00000469802 IFITM5A6NNB3 132 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 RAB27BO00194 218 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 FABP7O15540 132 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 TFAP2AP05549 437 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 FCGR3AP08637 254 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 INSL3P51460 131 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 LINC00205P59089 165 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 PLGLAQ15195 96 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 PSG5Q15238 335 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 ZNF260Q3ZCT1 412 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 RAB3CQ96E17 227 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 PRR25Q96S07 402 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 ALX4Q9H161 411 aaPredicted RBP12.62□□□□□ -0.39
COL9A3-208ENST00000469802 METTL1Q9UBP6 276 aaKnown RBP12.62□□□□□ -0.39
COL9A3-208ENST00000469802 ZNF221Q9UK13 617 aa12.62□□□□□ -0.39
COL9A3-208ENST00000469802 TRDV1A0A1B0GX56 115 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 PDCD5O14737 125 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 CA2P00918 260 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 LGALS1P09382 135 aaKnown RBP12.61□□□□□ -0.39
COL9A3-208ENST00000469802 CD3GP09693 182 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 RAB6AP20340 208 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 GALP22466 123 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 ECI1P42126 302 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 GABARAPL2P60520 117 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 SSBP2P81877 361 aaPredicted RBP12.61□□□□□ -0.39
COL9A3-208ENST00000469802 AKIRIN2Q53H80 203 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 PYHIN1Q6K0P9 492 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 ZNF562Q6V9R5 426 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 PPP1R27Q86WC6 154 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 NR2C2APQ86WQ0 139 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms