RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SERPINE2P07093 398 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 SAA2P0DJI9 122 aaPredicted RBP14□□□□□ -0.17
CCDC28B-202ENST00000421922 PRTN3P24158 256 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 SP6Q3SY56 376 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 VMO1Q7Z5L0 202 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 PNKDQ8N490 385 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 C11orf42Q8N5U0 333 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 LINC00311Q8N616 119 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 ZNF596Q8TC21 504 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 CHAC2Q8WUX2 184 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 Q96MF0 132 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 GPHA2Q96T91 129 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 SHPKQ9UHJ6 478 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 POLR3KQ9Y2Y1 108 aaPredicted RBP14□□□□□ -0.17
CCDC28B-202ENST00000421922 WNK2Q9Y3S1 2297 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 TOX4O94842 621 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 IFNA21P01568 189 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 IGLV2-14P01704 120 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 RIPPLY3P57055 190 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 RPL39P5Q59GN2 51 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 NCR3LG1Q68D85 454 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 LIAT1Q6ZQX7 453 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 OTOGQ6ZRI0 2925 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 ZNF695Q8IW36 515 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 ADTRPQ96IZ2 230 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 TP53RKQ96S44 253 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 PCGF1Q9BSM1 259 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 PRR13Q9NZ81 148 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 GAB2Q9UQC2 676 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 PRELID3BQ9Y3B1 194 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 APCP25054 2843 aa13.99□□□□□ -0.17
CCDC28B-202ENST00000421922 FAM25EA8MYX2 175 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 RNF223E7ERA6 249 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 MSMBP08118 114 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 SULT1A3P0DMM9 295 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 SULT1A4P0DMN0 295 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 THBS3P49746 956 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 CD83Q01151 205 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 LOXL1Q08397 574 aaPredicted RBP13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 TMEM187Q14656 261 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 ANKRD55Q3KP44 614 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 UTF1Q5T230 341 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 DCAF12L2Q5VW00 463 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 TCTEX1D1Q8N7M0 179 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 Q8N7P7 452 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 RNASE11Q8TAA1 199 aaKnown RBP13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 TMEM186Q96B77 213 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 PDCD10Q9BUL8 212 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 REG4Q9BYZ8 158 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 TMEM222Q9H0R3 208 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 MMP26Q9NRE1 261 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 INSIG2Q9Y5U4 225 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 ARG1P05089 322 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 KIR2DS2P43631 304 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 PAX2Q02962 417 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 OR2B11Q5JQS5 317 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 FAM71F2Q6NXP2 309 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 LINC01356Q8N9X3 169 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 BEND2Q8NDZ0 799 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 CD300LFQ8TDQ1 290 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 C5orf30Q96GV9 206 aa13.98□□□□□ -0.17
CCDC28B-202ENST00000421922 F8P00451 2351 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 TRAV20A0A0B4J274 112 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 C5orf51A6NDU8 294 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 A8MV72 311 aaPredicted RBP13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 ATG12O94817 140 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 HOXB5P09067 269 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 UCP1P25874 307 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 DUTP33316 252 aaKnown RBP13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 DLX1P56177 255 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 PRB3Q04118 309 aaPredicted RBP13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 HLA-DRB5Q30154 266 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 TMEM268Q5VZI3 342 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 SPAG16Q8N0X2 631 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 OR11H7Q8NGC8 314 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 GLYATL2Q8WU03 294 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 SIRPDQ9H106 197 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 RAB18Q9NP72 206 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 ZNRD1Q9P1U0 126 aa13.97□□□□□ -0.17
CCDC28B-202ENST00000421922 ABCA2Q9BZC7 2435 aa13.96□□□□□ -0.17
CCDC28B-202ENST00000421922 APOA2P02652 100 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 RPA2P15927 270 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 CEACAM3P40198 252 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 LGALS4P56470 323 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 KLRD1Q13241 179 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 GSG1LQ6UXU4 331 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 ZNF833PQ6ZTB9 187 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 TGIF2LXQ8IUE1 241 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 ODF3L1Q8IXM7 274 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 DRAXINQ8NBI3 349 aaPredicted RBP13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 OR5M8Q8NGP6 311 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 RBPMSQ93062 196 aaKnown RBP13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 CHIAQ9BZP6 476 aa13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 ZNF436Q9C0F3 470 aaPredicted RBP13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 UNKLQ9H9P5 680 aaKnown RBP13.96□□□□□ -0.18
CCDC28B-202ENST00000421922 MED13LQ71F56 2210 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 C13orf42A0A1B0GVH6 325 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 DUXBA0A1W2PPF3 345 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 CCSO14618 274 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 TXNL1O43396 289 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms