RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 LANCL1O43813 399 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 GABARAPO95166 117 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 ALDH3B2P48448 385 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 PITPNAQ00169 270 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 DCTN2Q13561 401 aaKnown RBP22.4■■□□□ 1.18
HMGB1-205ENST00000399494 SLC35E3Q7Z769 313 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 IZUMO1Q8IYV9 350 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 KLHL30-AS1Q8NEE0 82 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 TRAV18A0A075B6X5 111 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 A0A0A6YYH2 397 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 A6NJ64 397 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 BET1O15155 118 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 TFAP2AP05549 437 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 DTYMKP23919 212 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 SLC35B1P78383 322 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 EBI3Q14213 229 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 PNLIPRP3Q17RR3 467 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 ZNF260Q3ZCT1 412 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 ZNF695Q8IW36 515 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 STPG2Q8N412 459 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 NUDCD2Q8WVJ2 157 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 PIPOXQ9P0Z9 390 aa22.39■■□□□ 1.17
HMGB1-205ENST00000399494 ZMAT5Q9UDW3 170 aaKnown RBP22.39■■□□□ 1.17
HMGB1-205ENST00000399494 GSTT2P0CG29 244 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 GSTT2BP0CG30 244 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 DGCR2P98153 550 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 UBE2NLQ5JXB2 153 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 ODF3L1Q8IXM7 274 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 SAMD12Q8N8I0 201 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 OR10J5Q8NHC4 309 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 KCTD12Q96CX2 325 aaKnown RBP22.38■■□□□ 1.17
HMGB1-205ENST00000399494 DUX3Q96PT4 197 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 PARP12Q9H0J9 701 aaKnown RBP22.38■■□□□ 1.17
HMGB1-205ENST00000399494 IFI27L2Q9H2X8 130 aa22.38■■□□□ 1.17
HMGB1-205ENST00000399494 SAA2-SAA4A0A096LPE2 208 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 IGKV1-6A0A0C4DH72 117 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 SAA2P0DJI9 122 aaPredicted RBP22.37■■□□□ 1.17
HMGB1-205ENST00000399494 CD1BP29016 333 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 OR3A3P47888 321 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 CTF1Q16619 201 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 SRSF7Q16629 238 aaKnown RBP eCLIP22.37■■□□□ 1.171e-10■■■■□ 20
HMGB1-205ENST00000399494 OR2T10Q8NGZ9 312 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 S100A16Q96FQ6 103 aaKnown RBP22.37■■□□□ 1.17
HMGB1-205ENST00000399494 RAX2Q96IS3 184 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 S1PR3Q99500 378 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 ST6GALNAC5Q9BVH7 336 aa22.37■■□□□ 1.17
HMGB1-205ENST00000399494 ITGB1BP1O14713 200 aa22.36■■□□□ 1.17
HMGB1-205ENST00000399494 RAB29O14966 203 aa22.36■■□□□ 1.17
HMGB1-205ENST00000399494 IGSF11Q5DX21 431 aa22.36■■□□□ 1.17
HMGB1-205ENST00000399494 FOXRED2Q8IWF2 684 aa22.36■■□□□ 1.17
HMGB1-205ENST00000399494 GINS4Q9BRT9 223 aa22.36■■□□□ 1.17
HMGB1-205ENST00000399494 CABLES2Q9BTV7 478 aa22.36■■□□□ 1.17
HMGB1-205ENST00000399494 C11orf54Q9H0W9 315 aaPredicted RBP22.36■■□□□ 1.17
HMGB1-205ENST00000399494 RDH8Q9NYR8 311 aa22.36■■□□□ 1.17
HMGB1-205ENST00000399494 CCL24O00175 119 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 NHLRC4P0CG21 123 aaPredicted RBP22.35■■□□□ 1.17
HMGB1-205ENST00000399494 RORCP51449 518 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 Q6ZS49 121 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 ZNF833PQ6ZTB9 187 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 ABHD14BQ96IU4 210 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 EAF1Q96JC9 268 aaPredicted RBP22.35■■□□□ 1.17
HMGB1-205ENST00000399494 MRPL20Q9BYC9 149 aaKnown RBP22.35■■□□□ 1.17
HMGB1-205ENST00000399494 ABCG5Q9H222 651 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 DCSTAMPQ9H295 470 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 GHITMQ9H3K2 345 aa22.35■■□□□ 1.17
HMGB1-205ENST00000399494 DIRAS3O95661 229 aa22.34■■□□□ 1.17
HMGB1-205ENST00000399494 LSAMPQ13449 338 aa22.34■■□□□ 1.17
HMGB1-205ENST00000399494 FAM71F2Q6NXP2 309 aa22.34■■□□□ 1.17
HMGB1-205ENST00000399494 TEX38Q6PEX7 206 aa22.34■■□□□ 1.17
HMGB1-205ENST00000399494 COMMD3Q9UBI1 195 aa22.34■■□□□ 1.17
HMGB1-205ENST00000399494 ZNF221Q9UK13 617 aa22.34■■□□□ 1.17
HMGB1-205ENST00000399494 LSM4Q9Y4Z0 139 aaKnown RBP22.34■■□□□ 1.17
HMGB1-205ENST00000399494 TRBV6-7A0A0A0MS04 114 aa22.33■■□□□ 1.17
HMGB1-205ENST00000399494 ZNF736B4DX44 427 aaPredicted RBP22.33■■□□□ 1.17
HMGB1-205ENST00000399494 RAMP3O60896 148 aa22.33■■□□□ 1.17
HMGB1-205ENST00000399494 MOSP00540 346 aa22.33■■□□□ 1.17
HMGB1-205ENST00000399494 RPL39P5Q59GN2 51 aa22.33■■□□□ 1.17
HMGB1-205ENST00000399494 CLVS1Q8IUQ0 354 aaPredicted RBP22.33■■□□□ 1.17
HMGB1-205ENST00000399494 Q8N6K4 173 aa22.33■■□□□ 1.17
HMGB1-205ENST00000399494 ACOT12Q8WYK0 555 aa22.33■■□□□ 1.17
HMGB1-205ENST00000399494 RNF150Q9ULK6 438 aa22.33■■□□□ 1.17
HMGB1-205ENST00000399494 IGKV1D-8A0A087WSZ0 117 aa22.32■■□□□ 1.16
HMGB1-205ENST00000399494 NCBP2LA6PVI3 153 aaKnown RBP22.32■■□□□ 1.16
HMGB1-205ENST00000399494 AP4M1O00189 453 aa22.32■■□□□ 1.16
HMGB1-205ENST00000399494 SSX5O60225 188 aa22.32■■□□□ 1.16
HMGB1-205ENST00000399494 RPLP1P05386 114 aaKnown RBP22.32■■□□□ 1.16
HMGB1-205ENST00000399494 GPR12P47775 334 aa22.32■■□□□ 1.16
HMGB1-205ENST00000399494 NABP2Q9BQ15 211 aa22.32■■□□□ 1.16
HMGB1-205ENST00000399494 AGMATQ9BSE5 352 aa22.32■■□□□ 1.16
HMGB1-205ENST00000399494 AUNIPQ9H7T9 357 aa22.32■■□□□ 1.16
HMGB1-205ENST00000399494 XRCC3O43542 346 aa22.31■■□□□ 1.16
HMGB1-205ENST00000399494 RPL5P46777 297 aaKnown RBP22.31■■□□□ 1.16
HMGB1-205ENST00000399494 TMEM69Q5SWH9 247 aa22.31■■□□□ 1.16
HMGB1-205ENST00000399494 Q8N9W7 124 aa22.31■■□□□ 1.16
HMGB1-205ENST00000399494 LIN7CQ9NUP9 197 aaKnown RBP22.31■■□□□ 1.16
HMGB1-205ENST00000399494 RBM7Q9Y580 266 aaKnown RBP22.31■■□□□ 1.16
HMGB1-205ENST00000399494 RAB25P57735 213 aa22.3■■□□□ 1.16
HMGB1-205ENST00000399494 LCNL1Q6ZST4 164 aa22.3■■□□□ 1.16
HMGB1-205ENST00000399494 AP3S1Q92572 193 aa22.3■■□□□ 1.16
HMGB1-205ENST00000399494 TOLLIPQ9H0E2 274 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms